Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04164 ATGTGTTGGCACAAAGGTCAGAGTGCTGTTATCGTTGACGATCAAATTGACCAGGAGCGGATTACGAAGGTGATTTTGTATATATCATCTTTGAGTTGTAATGTGAAAAGGCCTTTTCTCATAATCTCAACTTCTACTGGCCTCTCTACATGGGAAACAGAATTCTTAAATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAACAAAATATGTACGCGATAACATCAGAGCGTTAGAGTTTGATAATGAAGATGGTGGTAGTTCATTTCAAATATTACTATCATCATCTGATATCATCATTGAGGACTTACATGCATTGAGATACATTCAATGGGAAGCAATAATAATTGATGAATGCCATCGACCCAGAATTTTAGGACAGTTTGACAATCTCAATATTCTAAAAGCTGAGACAAGGCTCCTTCTCATCAGTGGACAAATCAAGGAAGATCGTGCGGATTATATCAAACTCCTTTCATTCCTTAAGTCAGGACATGATGAGTTACATTTCTCATCTGCAAGCATCTCCAATTTGAAGAGTCAATTGGAACAATATATTGCACTTAAGTGCAGTTCTGACTCAAGCAGGTTTATAGAGTATTGGGTTCCTGCGCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGCTCAATACTGCTTTCAAACTCATTGCTGTTATGCTCAGGCCAGAAGTCTAATTCTGTTGATGCCCTTCGTGACCTTATTATCTCAACAAGGAAGTGCTGCAACCATCCTTATCTCCTCAACCCGTCACTGAGTAGTTTGGTAACCGGAGGTCTGCCTGTTGAAGAGCATTTAGATATTGGAATAAAAGTAAGTGGAAAATTGCAACTTCTTGAAAAGATCCTTGTTGAAGCTAAAAGTCGTGAGCTAAAAGTGATGATATTATATCAGTCTAGTGGTGGTTCTGGATCAATTGGAAATATTCTGGATGATGTTCTCTGTCAGAGATTTGGAAATGACTGCTATGTACGATATGGTAGAGGTTACATTCCTTCAAAGAAGCAAGCTGCTTTGGCCGCATTTAATGATAGAGAAAGTGGACGATTTGTTTTCTTGATAGAGAGCAGTGCTTGTACCCCTAGCATCAAGCTGTCATCTGTGGATACTATTATATTATTTGACAGTGGTTTGGACCCTCAAAATGACCTAAAGTCCCTACAAAAAATGTCCATCAGCTCAAAGTTCAAAAAGTTACCAGTTTTGAGATTGTACTCATACTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGGGAATAGCTCTTGACAGCAACATGCAGTTGATTAGCCAGAGTACTAATCACAGCCTGCTAAAATGGGGTGCCTCTTATCTGTTCAGTAAGCTTGATGACTTGCATGGAAGCGGATCCTCTGCCTCTGCTTCAGACATCTCTGATCATTCAATTCTGAGTGATGTAATATTTGAACTATCATCCAAACTGGTTTGTGATAGCGATGGAATTGATTGTCATGGACAGTCATTCATATCGAGAGTACAACAAAATGGAGGGGAATATGCAAGAAACATTTCATTGCTAGGAGAAAGAGAAATGAAGAAATTGGGGAATGAAACACATACTTTTTCCTGGAGTGATCTCCTAAAAGGAAGGTATCCTCATTGGAGGTTTTTACCTGTTTTACCTCAAAGGATCCGAAAAAGAGTTGAATATTTTCATCCCTCACTAACAGAATCTGAGTATGAAAATGACACCATTTCAATAAGGAGGAAAACAGCGTCCAAGGATAATGTAGATCCTGAGGAGAGGAAAGTCACCAAGGATAGTGTTGACCCCAAAAGAAGGAAAATGTCCGAGGATATTGTTGGTAGTAAAAGGAGGGAATTCTCAAAGAGTGTTGCTGATCCTAAGGAAATTCTTGATTCCAATGGTTGTAAAGTGTCCGAGGATATTGTTGGTTCTAAACATGTGAAAAAGAAGTGGAAGAACAAGAAGAATCGAAGTCCTGGTAAAAGGAGAAGACAATTGAACGGAGTATCTGTAATTAACAAACCGATTCAAAAACTAAAGAAGCCGCCTGAGATGCCCAAGAGCACCAAACTCTTGTCAAAGCCTGATATATCAGATCTCTGTGATGTTCTACACATTCCGGAAAATGTCAAGGCTGTTGCCATGAGGCTTCTTGAGTATGTATTTGAACATTACAATGTTTGTTGCCTGGAAGCTTCTATAGTGCAGGCATTTGAAATATCGGTGTGTTGGGTTGCAGCTTCTTTGTTGAAACACGAGATTGATAGGAAACATTCACTTGATCTTGCAAAACAACACTTGAATTTCAATTGCAAGGAGGAAGAGGCCACCTATGTTTACGACAAACTGCAGAAGCATGAGAAAGATTTTTCAAGCTGTTTACAAAATGAACTTTCTGTTGAGAAAAATAATACACATATTGGTTCAGACTCCTTGGCACCTGAGCTGAAAGATTTGGTAGAGGAGGAGAAGCAAAAGGGTTTTCAGCATCCTCACGTTTTAAATCTTGTGAAATCTCCCAAAAATGAAGCTGATCTTTCTATAAAATCTCCCACAAGTGAAATTGATCTTCCAAGAAAATCTCCCACAACAGTGCTATTTTCACAAAATCAGATTTATACAGAAAACATTCATAATGAACCTTATATGGCTCATGAAATTGCTACATCTCAAAAGAACCCTGGTAGTTTTCCTATGGAACCGGAAGCAGATGCTACTTCCATGGAATGTGTTCCAGATGAAGGAATAAATTCCATAAACTTGGTAGCAGCTGAAGTTTCATCGCTCGAGCACTGGAATGAAGTCCCCAATTCAAGTAATGATTCCAATTATGTCAACCATGTTACAGGTTCTTTGGAAAGACAGAGTCCCATTGTAAGTTCAGATATTACACCATGTGATGACAGTTTTTTTGAAGGTCTTCAAATTTTTATGAATCAAGTGATTGACATTGACAATTCTATGAATATGTCAACTCCTTCTGCACAACTTCTCAATGTTGAGACTGATCCTGTAACTTGTGATAGAACTGATGTTCCTGAGGTAACACAGCCATACAGTACAGTGAGGCCTGTATGTGGTGAGTCAACTACTTCGGAGTTTTCTGAGTGGCCTTTACCATATACACAACTATCACTTGCAGATTTAGTGGCATTTTCACAGACATCACAACCCACCAGTGAAGCGCCCGAGAATGAAAATTTCACTTGTGCGCCTCATGACATCACCAATCCTGGATATATGAACAGTGATCATTTTCAAGCTCATTACGGGCCATTTGAAATGCCAATTGAAATGCCCCTTGATGCAGACTCATTATTAATAGAAATGGAGCAAATAATAAAGAATAGGGAAGAAGCCTACAAGACACGCGAAGAAAAAATATTGCAGCTGCAGTCCGACTACACAAAGGAGTACGAAATGTTAAGGGAAAAGTACAATATGTTGCTTCAGAATGTTGATACTGCAGAAGGATTAAAGAATGAGGAACTTGAGACACAGCGTAATATCGTTTCCAAGAGTATGATATTAGCTGACATTTGGTGCCGAAATTATAGTTGTTTCTATAGAAATTTGCAGCAGAATGAACATATCATGGAAACGTCCATCTTTGATTCACCATACCACTCGTATCCCTGCTCAATGACACCACCAGTTTATGGAAACTTCCATCTATGA 3696 0.3891 MCWHKGQSAVIVDDQIDQERITKVILYISSLSCNVKRPFLIISTSTGLSTWETEFLNLAPSANLVVYKGTKYVRDNIRALEFDNEDGGSSFQILLSSSDIIIEDLHALRYIQWEAIIIDECHRPRILGQFDNLNILKAETRLLLISGQIKEDRADYIKLLSFLKSGHDELHFSSASISNLKSQLEQYIALKCSSDSSRFIEYWVPAQLSSLQLEQYCSILLSNSLLLCSGQKSNSVDALRDLIISTRKCCNHPYLLNPSLSSLVTGGLPVEEHLDIGIKVSGKLQLLEKILVEAKSRELKVMILYQSSGGSGSIGNILDDVLCQRFGNDCYVRYGRGYIPSKKQAALAAFNDRESGRFVFLIESSACTPSIKLSSVDTIILFDSGLDPQNDLKSLQKMSISSKFKKLPVLRLYSYFTVEEKVLMLAKEGIALDSNMQLISQSTNHSLLKWGASYLFSKLDDLHGSGSSASASDISDHSILSDVIFELSSKLVCDSDGIDCHGQSFISRVQQNGGEYARNISLLGEREMKKLGNETHTFSWSDLLKGRYPHWRFLPVLPQRIRKRVEYFHPSLTESEYENDTISIRRKTASKDNVDPEERKVTKDSVDPKRRKMSEDIVGSKRREFSKSVADPKEILDSNGCKVSEDIVGSKHVKKKWKNKKNRSPGKRRRQLNGVSVINKPIQKLKKPPEMPKSTKLLSKPDISDLCDVLHIPENVKAVAMRLLEYVFEHYNVCCLEASIVQAFEISVCWVAASLLKHEIDRKHSLDLAKQHLNFNCKEEEATYVYDKLQKHEKDFSSCLQNELSVEKNNTHIGSDSLAPELKDLVEEEKQKGFQHPHVLNLVKSPKNEADLSIKSPTSEIDLPRKSPTTVLFSQNQIYTENIHNEPYMAHEIATSQKNPGSFPMEPEADATSMECVPDEGINSINLVAAEVSSLEHWNEVPNSSNDSNYVNHVTGSLERQSPIVSSDITPCDDSFFEGLQIFMNQVIDIDNSMNMSTPSAQLLNVETDPVTCDRTDVPEVTQPYSTVRPVCGESTTSEFSEWPLPYTQLSLADLVAFSQTSQPTSEAPENENFTCAPHDITNPGYMNSDHFQAHYGPFEMPIEMPLDADSLLIEMEQIIKNREEAYKTREEKILQLQSDYTKEYEMLREKYNMLLQNVDTAEGLKNEELETQRNIVSKSMILADIWCRNYSCFYRNLQQNEHIMETSIFDSPYHSYPCSMTPPVYGNFHL 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04164 1231 Pfam SNF2-related domain 34 166 IPR000330 GO:0005524|GO:0140658
Vivi6g04164 1231 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Vivi6g04164 1231 Gene3D - 199 433 IPR027417 -
Vivi6g04164 1231 Gene3D - 2 198 IPR038718 -
Vivi6g04164 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 435 IPR027417 -
Vivi6g04164 1231 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 881 - -
Vivi6g04164 1231 MobiDBLite consensus disorder prediction 587 624 - -
Vivi6g04164 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 167 IPR027417 -
Vivi6g04164 1231 Gene3D - 1109 1189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04164 Vivi-Chr6 140825429 140832458 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g04164 SNF2_N 7e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04164 - K11643 gmx:100813574 1219.91