Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04163 ATGACTGTTGCGTGTGACATGAAAGCTCATACTCTTGTTACTGATATTGGAGGGGATTCCTATTCAAAGTATGGCAATGAATTGAATGAAGAATATAAAGATAACACACTTGTGAATCCTAATGATAAAAATGGAAAAGGTGATGGGGGAGTTGTTTGTTACAAGTGCTTGCGCGGGGGAACACTCTTGTACTGTTGTGGTAAAAGATGTGGAAGGAGGTATCACCCGTCTTGTTTGGATCTTCCTCTCAAATTTCTTCCTATAGGGTTTTGGCATTGTATTTCTTGTAATGAGAAAAAAATAAAGCTTGGCGTGCATTCTGTTTCTAAAGGGGTAGAATCCATATTTGATTCTCGAGAAGTCGTTTCCAAAGATGAAGTTATCGAAAGGGAGTACTTTGTCAAGTATCAGGGCTTTGCTCATGCTCATAACTGTTGGATTCCAGAAAAACAGATGCTTATTGAGGCTCCGAAGCTTTTGGAAAAGTACAAGAAGAAACAACAGGTTGTCAGGTGGAAAAAAGATTGGAGTATACCTCAACGGTTGTTGCTAAAAAGGAAAATTATTATGTCAAAGCAAAATGCTGACCCTTTTGATGGAAATGATGACAATGATTCAATTTGCCAATATGAATGGCTTGTGAAATGGGCTGGTCTTGGTTATGATCATGTTACATGGGAGTTAGACGATGCTTCATTTATGAGATCTTCTAAAGGCATGAAACTTGTAGAGAATTATGAAAGTCGTCAAAAGAGATCGGTTGGACTGTCGAATCCTCTTGAAGCTAATGAGGAGAAAAAAGTTTCCTTTACCGAATTATCGGTATTATCATCATTTGGAGATTCACCTGGATTGTATAACCAGCATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGCTGTTATCGTTGACGATCAAATTGACCAGGAGCGGATTACGAAGGTGATTTTGTATATATCATCTTTGAGTTGTAATGTGAAAAGGCCTTTTCTCATAATCTCAACTTCTACTGGCCTCTCTACATGGGAAACAGAATTCTTAAATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAACAAAATATGTACGCGATAACATCAGAGCGTTAGAGTTTGATAATGAAGATGGTGGTAGTTCATTTCAAATATTACTATCATCATCTGATATCATCATTGAGGACTTACATGCATTGAGATACATTCAATGGGAAGCAATAATAATTGATGAATGCCATCGACCCAGAATTTTAGGACAGTTTGACAATCTCAATATTCTAAAAGCTGAGACAAGGCTCCTTCTCATCAGTGGACAAATCAAGGAAGATCGTGCGGATTATATCAAACTCCTTTCATTCCTTAAGTCAGGACATGATGAGTTACATTTCTCATCTGCAAGCATCTCCAATTTGAAGAGTCAATTGGAACAATATATTGCACTTAAGTGCAGTTCTGACTCAAGCAGGTTTATAGAGTATTGGGTTCCTGCGCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGCTCAATACTGCTTTCAAACTCATTGCTGTTATGCTCAGGCCAGAAGTCTAATTCTGTTGATGCCCTTCGTGACCTTATTATCTCAACAAGGAAGTGCTGCAACCATCCTTATCTCCTCAACCCGTCACTGAGTAGTTTGGTAACCGGAGGTCTGCCTGTTGAAGAGCATTTAGATATTGGAATAAAAGTAAGTGGAAAATTGCAACTTCTTGAAAAGATCCTTGTTGAAGCTAAAAGTCGTGAGCTAAAAGTGATGATATTATATCAGTCTAGTGGTGGTTCTGGATCAATTGGAAATATTCTGGATGATGTTCTCTGTCAGAGATTTGGAAATGACTGCTATGTACGATATGGTAGAGGTTACATTCCTTCAAAGAAGCAAGCTGCTTTGGCCGCATTTAATGATAGAGAAAGTGGACGATTTGTTTTCTTGATAGAGAGCAGTGCTTGTACCCCTAGCATCAAGCTGTCATCTGTGGATACTATTATATTATTTGACAGTGGTTTGGACCCTCAAAATGACCTAAAGTCCCTACAAAAAATGTCCATCAGCTCAAAGTTCAAAAAGTTACCAGTTTTGAGATTGTACTCATACTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGGGAATAGCTCTTGACAGCAACATGCAGTTGATTAGCCAGAGTACTAATCACAGCCTGCTAAAATGGGGTGCCTCTTATCTGTTCAGTAAGCTTGATGACTTGCATGGAAGCGGATCCTCTGCCTCTGCTTCAGACATCTCTGATCATTCAATTCTGAGTGATGTAATATTTGAACTATCATCCAAACTGGTTTGTGATAGCGATGGAATTGATTGTCATGGACAGTCATTCATATCGAGAGTACAACAAAATGGAGGGGAATATGCAAGAAACATTTCATTGCTAGGAGAAAGAGAAATGAAGAAATTGGGGAATGAAACACATACTTTTTCCTGGAGTGATCTCCTAAAAGGAAGGTATCCTCATTGGAGGTTTTTACCTGTTTTACCTCAAAGGATCCGAAAAAGAGTTGAATATTTTCATCCCTCACTAACAGAATCTGAGTATGAAAATGACACCATTTCAATAAGGAGGAAAACAGCGTCCAAGGATAATGTAGATCCTGAGGAGAGGAAAGTCACCAAGGATAGTGTTGACCCCAAAAGAAGGAAAATGTCCGAGGATATTGTTGGTAGTAAAAGGAGGGAATTCTCAAAGAGTGTTGCTGATCCTAAGGAAATTCTTGATTCCAATGGTTGTAAAGTGTCCGAGGATATTGTTGGTTCTAAACATGTGAAAAAGAAGTGGAAGAACAAGAAGAATCGAAGTCCTGGTAAAAGGAGAAGACAATTGAACGGAGTATCTGTAATTAACAAACCGATTCAAAAACTAAAGAAGCCGCCTGAGATGCCCAAGAGCACCAAACTCTTGTCAAAGCCTGATATATCAGATCTCTGTGATGTTCTACACATTCCGGAAAATGTCAAGGCTGTTGCCATGAGGCTTCTTGAGTATGTATTTGAACATTACAATGTTTGTTGCCTGGAAGCTTCTATAGTGCAGGCATTTGAAATATCGGTGTGTTGGGTTGCAGCTTCTTTGTTGAAACACGAGATTGATAGGAAACATTCACTTGATCTTGCAAAACAACACTTGAATTTCAATTGCAAGGAGGAAGAGGCCACCTATGTTTACGACAAACTGCAGAAGCATGAGAAAGATTTTTCAAGCTGTTTACAAAATGAACTTTCTGTTGAGAAAAATAATACACATATTGGTTCAGACTCCTTGGCACCTGAGCTGAAAGATTTGGTAGAGGAGGAGAAGCAAAAGGGTTTTCAGCATCCTCACGTTTTAAATCTTGTGAAATCTCCCAAAAATGAAGCTGATCTTTCTATAAAATCTCCCACAAGTGAAATTGATCTTCCAAGAAAATCTCCCACAACAGTGCTATTTTCACAAAATCAGATTTATACAGAAAACATTCATAATGAACCTTATATGGCTCATGAAATTGCTACATCTCAAAAGAACCCTGGTAGTTTTCCTATGGAACCGGAAGCAGATGCTACTTCCATGGAATGTGTTCCAGATGAAGGAATAAATTCCATAAACTTGGTAGCAGCTGAAGTTTCATCGCTCGAGCACTGGAATGAAGTCCCCAATTCAAGTAATGATTCCAATTATGTCAACCATGTTACAGGTTCTTTGGAAAGACAGAGTCCCATTGTAAGTTCAGATATTACACCATGTGATGACAGTTTTTTTGAAGGTCTTCAAATTTTTATGAATCAAGTGATTGACATTGACAATTCTATGAATATGTCAACTCCTTCTGCACAACTTCTCAATGTTGAGACTGATCCTGTAACTTGTGATAGAACTGATGTTCCTGAGGTAACACAGCCATACAGTACAGTGAGGCCTGTATGTGGTGAGTCAACTACTTCGGAGTTTTCTGAGTGGCCTTTACCATATACACAACTATCACTTGCAGATTTAGTGGCATTTTCACAGACATCACAACCCACCAGTGAAGCGCCCGAGAATGAAAATTTCACTTGTGCGCCTCATGACATCACCAATCCTGGATATATGAACAGTGATCATTTTCAAGCTCATTACGGGCCATTTGAAATGCCAATTGAAATGCCCCTTGATGCAGACTCATTATTAATAGAAATGGAGCAAATAATAAAGAATAGGGAAGAAGCCTACAAGACACGCGAAGAAAAAATATTGCAGCTGCAGTCCGACTACACAAAGGAGTACGAAATGTTAAGGGAAAAGTACAATATGTTGCTTCAGAATGTTGATACTGCAGAAGGATTAAAGAATGAGGAACTTGAGACACAGCGTAATATCGTTTCCAAGAGTATGATATTAGCTGACATTTGGTGCCGAAATTATAGTTGTTTCTATAGAAATTTGCAGCAGAATGAACATATCATGGAAACGTCCATCTTTGATTCACCATACCACTCGTATCCCTGCTCAATGACACCACCAGTTTATGGAAACTTCCATCTATGA 4587 0.3876 MTVACDMKAHTLVTDIGGDSYSKYGNELNEEYKDNTLVNPNDKNGKGDGGVVCYKCLRGGTLLYCCGKRCGRRYHPSCLDLPLKFLPIGFWHCISCNEKKIKLGVHSVSKGVESIFDSREVVSKDEVIEREYFVKYQGFAHAHNCWIPEKQMLIEAPKLLEKYKKKQQVVRWKKDWSIPQRLLLKRKIIMSKQNADPFDGNDDNDSICQYEWLVKWAGLGYDHVTWELDDASFMRSSKGMKLVENYESRQKRSVGLSNPLEANEEKKVSFTELSVLSSFGDSPGLYNQHLSYVNKLRMCWHKGQSAVIVDDQIDQERITKVILYISSLSCNVKRPFLIISTSTGLSTWETEFLNLAPSANLVVYKGTKYVRDNIRALEFDNEDGGSSFQILLSSSDIIIEDLHALRYIQWEAIIIDECHRPRILGQFDNLNILKAETRLLLISGQIKEDRADYIKLLSFLKSGHDELHFSSASISNLKSQLEQYIALKCSSDSSRFIEYWVPAQLSSLQLEQYCSILLSNSLLLCSGQKSNSVDALRDLIISTRKCCNHPYLLNPSLSSLVTGGLPVEEHLDIGIKVSGKLQLLEKILVEAKSRELKVMILYQSSGGSGSIGNILDDVLCQRFGNDCYVRYGRGYIPSKKQAALAAFNDRESGRFVFLIESSACTPSIKLSSVDTIILFDSGLDPQNDLKSLQKMSISSKFKKLPVLRLYSYFTVEEKVLMLAKEGIALDSNMQLISQSTNHSLLKWGASYLFSKLDDLHGSGSSASASDISDHSILSDVIFELSSKLVCDSDGIDCHGQSFISRVQQNGGEYARNISLLGEREMKKLGNETHTFSWSDLLKGRYPHWRFLPVLPQRIRKRVEYFHPSLTESEYENDTISIRRKTASKDNVDPEERKVTKDSVDPKRRKMSEDIVGSKRREFSKSVADPKEILDSNGCKVSEDIVGSKHVKKKWKNKKNRSPGKRRRQLNGVSVINKPIQKLKKPPEMPKSTKLLSKPDISDLCDVLHIPENVKAVAMRLLEYVFEHYNVCCLEASIVQAFEISVCWVAASLLKHEIDRKHSLDLAKQHLNFNCKEEEATYVYDKLQKHEKDFSSCLQNELSVEKNNTHIGSDSLAPELKDLVEEEKQKGFQHPHVLNLVKSPKNEADLSIKSPTSEIDLPRKSPTTVLFSQNQIYTENIHNEPYMAHEIATSQKNPGSFPMEPEADATSMECVPDEGINSINLVAAEVSSLEHWNEVPNSSNDSNYVNHVTGSLERQSPIVSSDITPCDDSFFEGLQIFMNQVIDIDNSMNMSTPSAQLLNVETDPVTCDRTDVPEVTQPYSTVRPVCGESTTSEFSEWPLPYTQLSLADLVAFSQTSQPTSEAPENENFTCAPHDITNPGYMNSDHFQAHYGPFEMPIEMPLDADSLLIEMEQIIKNREEAYKTREEKILQLQSDYTKEYEMLREKYNMLLQNVDTAEGLKNEELETQRNIVSKSMILADIWCRNYSCFYRNLQQNEHIMETSIFDSPYHSYPCSMTPPVYGNFHL 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04163 1528 Gene3D - 111 169 - -
Vivi6g04163 1528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 464 IPR014001 -
Vivi6g04163 1528 MobiDBLite consensus disorder prediction 884 921 - -
Vivi6g04163 1528 ProSitePatterns Zinc finger PHD-type signature. 53 96 IPR019786 -
Vivi6g04163 1528 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 111 1178 - -
Vivi6g04163 1528 Gene3D - 285 495 IPR038718 -
Vivi6g04163 1528 SUPERFAMILY Chromo domain-like 69 169 IPR016197 -
Vivi6g04163 1528 CDD CD_CSD 112 165 - -
Vivi6g04163 1528 SMART chromo_7 175 251 IPR000953 -
Vivi6g04163 1528 SMART chromo_7 109 168 IPR000953 -
Vivi6g04163 1528 Gene3D - 1406 1486 - -
Vivi6g04163 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 732 IPR027417 -
Vivi6g04163 1528 SUPERFAMILY Chromo domain-like 209 250 IPR016197 -
Vivi6g04163 1528 Pfam SNF2-related domain 331 463 IPR000330 GO:0005524|GO:0140658
Vivi6g04163 1528 Gene3D - 496 730 IPR027417 -
Vivi6g04163 1528 ProSiteProfiles Zinc finger PHD-type profile. 50 99 IPR019787 -
Vivi6g04163 1528 Gene3D - 183 253 - -
Vivi6g04163 1528 ProSiteProfiles Chromo and chromo shadow domain profile. 110 175 IPR000953 -
Vivi6g04163 1528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 107 IPR013083 -
Vivi6g04163 1528 ProSiteProfiles Chromo and chromo shadow domain profile. 183 250 IPR000953 -
Vivi6g04163 1528 SMART PHD_3 52 97 IPR001965 -
Vivi6g04163 1528 Pfam Chromo (CHRromatin Organisation MOdifier) domain 112 166 IPR023780 -
Vivi6g04163 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 464 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04163 Vivi-Chr6 140822122 140832458 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g04163 SNF2_N 5.9e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04163 - K11643 gmx:100813574 1496.49