Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04147 ATGTCAAAAGAATCTGAAGAGATTAAAACTATTGAGCAATGGAAATGGTCTGAAATGCAAGGACTTGAGCTTGTCAATGATGATATGAACTCTTCTAAAGGGAACCTACCAACAGTAACAGAAGAGGGTGTTAGTGGAACTGCTTCTGTTAGTGTTAATGGTTCTGAGAATCAAGTTCAAGTTTTGAAGGAAATGGAAGAAGATAACAAAGATGGTGATGGTGGTGGTAAGGAGAAGAAGGGTCAGAATTTTGATGCTGTTGGGTTTGGAGAGCTTTTTAGATTTGCTGATGGGTTGGATTATGTTCTAATGACAATTGGGACTTTTGGAGCAATTGTTCATGGCTGTTCTTTGCCTATTTTTCTTAGATTCTTTGCGGATCTTGTTAACTCTTTTGGGTCAAATGCTAATAATTTGGACAAGATGACACAAGAAGTTATGAAGTATGCATTATACTTCCTTGTGGTGGGTGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCGTGTTGGATGTGGACGGGTGAGCGACAATCGACCAAGATGAGGATCAAGTATCTGGAAGCTGCATTGAAACAAGACATTGAGTTCTTCGACACGGAGGTTCGAACTTCCGATGTTGTTTCTGCAATCAATACTGATGCTGTCATGGTCCAGGATGCCATAAGTGAGAAGTTGGGAAATTTCATTCACTACATGGCTACTTTTGTTTCTGGTTTTGTTGTTGGGTTCACTGCTGTTTGGCAATTGGCTTTGGTTACTCTTGCTGTTGTTCCTATGATAGCTGTAATCGGAGGCATTCATACCACAACTTTGGCTAAACTCACTAGTAAGAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGTAGAACAGACGATTGTGCAAATCCGAGTAGTGTTGGCATTTGTTGGCGAGTCTCAAGCACTACAAGGTTACTCTTCATCCTTGAAGGTTGCTCAGAAGCTTGGCTATAAAACTGGTCTTGCAAAGGGAATGGGATTAGGTGCAACTTACTTTGTTGTTTTCTGTTGTTACGCTCTTCTTCTATGGTACGGAGGATTTCTTATAAGGCATCACGACACCAATGGAGGACTTGCCATTGCGACCATGTTTGCTGTCATGATCGGTGGAATAGGTCTGGGACAATCTGCGCCTAGCATGGCTGCATTTACGAAGGCGAGAGTTGCTGCTGCTAAGATTTTCCGGATAATTGATCACAAGCCTGGAATCGACAGAAACAGTGAATCAGGATTGGAATTGGAGACAGTTACTGGACTCGTGGAGCTGAAAAATATTGACTTTTCTTATCCCTCTAGGCCTGATGTTAAAATCCTCAACAATTTCTCGTTAAATGTTCCTGCCGGAAAAACCATAGCTTTAGTTGGTAGCAGTGGCTCTGGCAAGAGTACTGTTGTTTCTCTTATTGAGAGATTCTACGACCCAACTTTAGGACAAGTCATGCTAGATGGACATGACATAAAAACTTTGAAGCTTAAATGGCTGAGGCAACAGATAGGACTTGTGAGCCAAGAGCCTGCTTTGTTCGCTACTACGATTCGAGAAAATATACTCTTGGGAAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCTCATTCATTCATCATAAAACTTCCCGAAGGCTTTGAAACTCAGGTAGGAGAAAGAGGACTGCAACTTTCCGGAGGGCAAAAGCAAAGAATTGCGATAGCAAGGGCAATGTTAAAGAATCCAGCGATTCTTCTCCTTGACGAAGCAACAAGTGCATTGGACTCTGAATCAGAAAAGTTGGTGCAAGAAGCACTTGACCGGTTCATGATTGGCAGAACAACTCTTGTAATTGCGCACCGTCTCTCCACCATTCGCAAAGCTGACCTCGTAGCCGTGATTCAACAAGGAAGTGTTTTTGAAATTGGAACTCATGACGAGCTCTTCTCCAAAGGGGAAAACGGAGTCTATGCCAAGCTCATTAAGATGCAGGAGATGGCTCATGAAACTGCAATGAATAATGCTAGAAAGAGTAGTGCAAGGCCTTCAAGTGCAAGAAACTCAGTTAGCTCGCCAATAATTACTAGGAATTCTTCTTATGGACGATCACCGTACTCACGTAGATTGTCTGATTTCTCTACATCAGATTTCAGTTTGTCACTAGATGCATCTCATCCAAATTACAAGCATGAAAAGCTTGCCTTCAAAGATCAAGCCGGTTCCTTCTGGAGACTAGTTAAAATGAACTCTCCTGAATGGCTTTATGCTTTACTCGGCTCAATCGGTTCAATTGTTTGTGGATCACTTAGTGCTTTTTTTGCTTATGTTCTTAGTGCTGTTCTCAGTATCTATTACAATCCGGACCACAAATACATGATCCGAGAAATAAATAAGTACTGCTACTTGTTGATTGGCCTTTCATCAACTGCACTTATCTTCAATACATTGCAACACTTCTTTTGGGATATTGTTGGCGAAAATCTTACGAAACGTGTGAGGGAGAAAATGCTGGCGGCCGTGCTTAAGAATGAAATGGCCTGGTTTGATCAGGAGGAAAATGAGAGTGCAAGGATTGCTGCAAGACTAGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGACCGAATTTCGATAATTGTGCAGAATACTGCACTTATGCTTGTTGCTTGTACCGCAGGTTTTGTGCTGCAGTGGCGTCTTGCCCTTGTCCTCATTGCTGTATTCCCTGTTGTTGTTGCAGCCACTGTGTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACTTGGAAGCCGCGCATGCCAAGGCCACACAACTAGCTGGGGAGGCTATAGCCAATGTAAGGACGGTTGCAGCCTTCAATTCAGAAGCAAAAATTGTTCGCCTTTTCGCTTCCAACCTTGAAACTCCGCTACAGAGGTGCTTTTGGAAGGGACAGATTTCTGGAAGCGGATACGGAGTAGCTCAGTTTGCACTTTATGCTTCGTATGCACTTGGTCTCTGGTATGCTTCATGGCTAGTGAAACATGGAATATCCGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTCATGGTCTCTGCCAATGGTGCTGCCGAGACATTAACGCTGGCTCCCGAGTTCATCAAAGGAGGTAGAGCCATGCGATCAGTTTTTGATCTCCTTGACCGGAGAACTGAGATTGAACCAGATGATCAAGATGCTACTCCCGTTCCTGACCGTCTTCGCGGTGAAGTTGAACTTAAGCATGTGGACTTCTCGTATCCCACTAGACCAGATATGCCGGTGTTTCGTGACCTTAATCTCCGTGTCCGAGCTGGCAAAACTCTTGCTCTAGTTGGACCTAGTGGCTGCGGTAAGAGCTCGGTGATTGCTCTTATACAGAGATTTTATGATCCAACGTCCGGCCGGGTCATGATCGACGGAAAGGACATTAGAAAATACAACCTCAAGTCCTTAAGGAGACACATCTCCGTGGTACCTCAAGAGCCATGCCTATTTGCTACTACTATTTACGAAAACATTGCATACGGCCATGACTCAGCAACAGAAACCGAGATAATAGAAGCCGCGACACTCGCCAATGCTCACAAGTTCATATCTTCTCTACCAGACGGATACAAAACCTTTGTAGGGGAGAGAGGTGTTCAGCTCTCCGGTGGACAAAAACAAAGAATAGCAGTTGCTCGCGCTTTTTTGAGGAAAGCCGAGCTTATGCTACTTGATGAGGCAACAAGTGCACTTGATGCCGAATCCGAGAGATCTGTTCAAGAGGCTCTAGACCGCGCTTCGGCAGGAAAAACAACCATCATTGTTGCGCATAAGTTATCAACTATCAGAAACGCCAATGTGATTGCTGTGATTGATGATGGTAAAGTAGCTGAACAAGGTTCACATTCACAGTTATTGAAAAATCATCAAGATGGGATATACGCGCGCATGATTCAATTACAAAGGTTTACACCCAACCAGGTAATTGGTATGGCATCTGGTTCAAGCTCTTCAACATGA 4023 0.437 MSKESEEIKTIEQWKWSEMQGLELVNDDMNSSKGNLPTVTEEGVSGTASVSVNGSENQVQVLKEMEEDNKDGDGGGKEKKGQNFDAVGFGELFRFADGLDYVLMTIGTFGAIVHGCSLPIFLRFFADLVNSFGSNANNLDKMTQEVMKYALYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALKQDIEFFDTEVRTSDVVSAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLTSKSQEALSQAGNIVEQTIVQIRVVLAFVGESQALQGYSSSLKVAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGFLIRHHDTNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRIIDHKPGIDRNSESGLELETVTGLVELKNIDFSYPSRPDVKILNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTLGQVMLDGHDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGFETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVIQQGSVFEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYKHEKLAFKDQAGSFWRLVKMNSPEWLYALLGSIGSIVCGSLSAFFAYVLSAVLSIYYNPDHKYMIREINKYCYLLIGLSSTALIFNTLQHFFWDIVGENLTKRVREKMLAAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISIIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEAKIVRLFASNLETPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPEFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRVRAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATETEIIEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRASAGKTTIIVAHKLSTIRNANVIAVIDDGKVAEQGSHSQLLKNHQDGIYARMIQLQRFTPNQVIGMASGSSSST 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04147 1340 Gene3D ABC transporter type 1, transmembrane domain 715 930 IPR036640 GO:0005524|GO:0016020
Vivi6g04147 1340 Gene3D ABC transporter type 1, transmembrane domain 981 1080 IPR036640 GO:0005524|GO:0016020
Vivi6g04147 1340 Pfam ABC transporter 446 595 IPR003439 GO:0005524
Vivi6g04147 1340 CDD ABC_6TM_Pgp_ABCB1_D1_like 104 401 - -
Vivi6g04147 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1083 1319 IPR003439 GO:0005524
Vivi6g04147 1340 SMART AAA_5 1110 1302 IPR003593 GO:0016887
Vivi6g04147 1340 SMART AAA_5 455 641 IPR003593 GO:0016887
Vivi6g04147 1340 Pfam ABC transporter 1102 1250 IPR003439 GO:0005524
Vivi6g04147 1340 MobiDBLite consensus disorder prediction 28 50 - -
Vivi6g04147 1340 ProSitePatterns ABC transporters family signature. 1222 1236 IPR017871 GO:0005524|GO:0016887
Vivi6g04147 1340 CDD ABC_6TM_Pgp_ABCB1_D2_like 750 1065 - -
Vivi6g04147 1340 Gene3D - 418 668 IPR027417 -
Vivi6g04147 1340 FunFam ABC transporter B family member 1 739 1048 - -
Vivi6g04147 1340 FunFam ABC transporter B family member 1 418 668 - -
Vivi6g04147 1340 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 428 664 IPR003439 GO:0005524
Vivi6g04147 1340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 760 1047 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g04147 1340 FunFam ABC transporter B family member 19 1049 1071 - -
Vivi6g04147 1340 CDD ABC_MTABC3_MDL1_MDL2 1083 1322 - -
Vivi6g04147 1340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 106 393 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g04147 1340 CDD ABC_MTABC3_MDL1_MDL2 428 667 - -
Vivi6g04147 1340 MobiDBLite consensus disorder prediction 674 705 - -
Vivi6g04147 1340 SUPERFAMILY ABC transporter transmembrane region 92 412 IPR036640 GO:0005524|GO:0016020
Vivi6g04147 1340 SUPERFAMILY ABC transporter transmembrane region 747 1067 IPR036640 GO:0005524|GO:0016020
Vivi6g04147 1340 Gene3D - 1081 1327 IPR027417 -
Vivi6g04147 1340 FunFam ABC transporter B family member 1 91 426 - -
Vivi6g04147 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1074 1322 IPR027417 -
Vivi6g04147 1340 FunFam ABC transporter B family member 1 1073 1323 - -
Vivi6g04147 1340 ProSitePatterns ABC transporters family signature. 567 581 IPR017871 GO:0005524|GO:0016887
Vivi6g04147 1340 Pfam ABC transporter transmembrane region 104 377 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g04147 1340 Pfam ABC transporter transmembrane region 762 1030 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g04147 1340 PANTHER ABC TRANSPORTER B FAMILY 67 816 IPR039421 -
Vivi6g04147 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 667 IPR027417 -
Vivi6g04147 1340 Gene3D ABC transporter type 1, transmembrane domain 91 680 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04147 Vivi-Chr6 140388425 140394476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04147 106 684 Calmodulin-binding Proteins AT2G36910 38.898 2.10e-118 399