Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04145 ATGGGAAGAGCTCCTTGCTGTGACAAAGCTAGTGTAAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCAATACTAAAGGATTACATAGAGAAAAATGGAACCGGTGGAAACTGGATTTCTCTCCCCAAAAAAGCTGGTTTGACAAGGTGTGGCAAAAGCTGTAGACTAAGATGGCTTAATTATCTTAGACCAAACATTAAGCATGGTGAATTTTCTGACTCAGAAGATAATATAATTTGCACCCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATTATAGCATCTAAGTTACAAGGAAGAACCGACAATGATGTGAAGAACTATTGGAACACAAAGCTCAAGAAAAAATTCATGTCCATGAATCAATCAGTGGAGATGAAATCTCAACAAGTTACCCTTCTATCCATTCTTCAAACTTCAACAATATCATCTCCATCTCCATCATTATCATTCACAGGTTCCTTTTCCTACTCATCAGCAGCATCTTCAAGTCTTTTGAGTGGAAATTCTCTTACTTCAGCACAAGAAAGTTTCACTGGTCCCTCTCAGAGAAATATCAAAAACCAGATCAACCATGTCATAGATCAAGAGCTTGTTGAAAAATATGATGATGATGATGATGTTGATTACCTCTATAATGGTGGAAGTGTTAATCAGTGGACAGAGAAAGAAAATGGATTATGGGGAGAAAATCCATTTGATGAAATTAAAGAGCTAATAATAAGCACTAGTAATACTACTAGTAGTTGCAACAACTTTTTGTTTGATGAGTAA 774 0.3682 MGRAPCCDKASVKKGPWSPEEDAILKDYIEKNGTGGNWISLPKKAGLTRCGKSCRLRWLNYLRPNIKHGEFSDSEDNIICTLFASIGSRWSIIASKLQGRTDNDVKNYWNTKLKKKFMSMNQSVEMKSQQVTLLSILQTSTISSPSPSLSFTGSFSYSSAASSSLLSGNSLTSAQESFTGPSQRNIKNQINHVIDQELVEKYDDDDDVDYLYNGGSVNQWTEKENGLWGENPFDEIKELIISTSNTTSSCNNFLFDE 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04145 257 PANTHER OS09G0431300 PROTEIN 1 182 - -
Vivi6g04145 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Vivi6g04145 257 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vivi6g04145 257 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vivi6g04145 257 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi6g04145 257 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vivi6g04145 257 FunFam Transcription factor RAX3 7 68 - -
Vivi6g04145 257 Gene3D - 70 133 - -
Vivi6g04145 257 CDD SANT 16 62 IPR001005 -
Vivi6g04145 257 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vivi6g04145 257 Gene3D - 7 68 - -
Vivi6g04145 257 CDD SANT 70 113 IPR001005 -
Vivi6g04145 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vivi6g04145 257 SMART sant 67 115 IPR001005 -
Vivi6g04145 257 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04145 Vivi-Chr6 140294844 140296885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04145 1 119 MYB Transcription Factor Family AT2G36890 82.353 4.30e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g04145 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04145 K09422 - gmx:778084 275.018