Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04135 ATGAGTTTCCCTTTCAACAATTTGCCCTACTTTCATATCGATTTGGGCAACTCCGACGAGTCCGAAATTCCGACCAGAGAAGACCTCATGGATGCCGGAGCAGATCCTCGATTCGTCAATTTAGTATTTAACGGACACTCCGGCGACGAGGAAGAGGAAGAGGAAGAGGAGGAGGAAGAAGAAGACGAAGATGATGAAGAGTATGTTCCCGCTGTGCCGTCGGCTAGGGTTTCTCACGGTCTCCGGAATCCTACATCAGAAGAAGTAATAGTTGTTCTCGACGACGAAGGACATAATTCAGTTGAAGACGAAAGAAACAAACGCCGCAGAACTGAAGGAGGAGAGGCTTCGTCTTCTTTACCCCCAATCGAAAGCGCCGACGACAGTCAAGAGACTGACTGGAACCGCACTGAGGTTGACGGCCTCATTTGCCCTATTTGTATGGATGCTTGGACCGATGATGGCGATCATCACGTCTGTTGTCTTCCTTGTGGACACATTTATGGCATGTCTTGCATCAAAAAATGGCTTAAACAGCGAAGCAATTCGGGGAAGTGTCCTCAATGTAATATGAAATGTTCGATGAAGGATGTGAGGAAACTCTATGCTTCCAGAGTAGTTGCTGTTGATGAAGAATCTCAGAAGAGAATTCAGTTACTTGAGACCAAATGTGCTTCTCTTCAGAGTAAGGATGGTGATTGGCGCAAGAAAGAAGTAGGATGGAAGAAGAGAGAAGCTGCATTGGATTTTGATGTTAAGAATCTCAGGGAGAGAAATACTTATTTGGAGCAGCTGGTACTAGATATGCAGAGTAGACAATCAGGATTAATGGATGCCAGTGGGAACTCTCAATGGGGATATGAATCTGAGCGAAACTATAACACAATGTCCCATGGAAAAGGATCATTTTGCAATTTTGTATTTCAGAAAGCATTTCAACTGGAAGGTGCTCGCATATTTGATATGGACACTTACAATCAAATTGTATTAATCGCACATAAGCCAAAAGCAATAGGTGATGTGCACTTGCTATCTAAAATGAGCTTAATATCTCCATTTGAGATGCAAGATATTGTACTGCCTTCATCTGCAAATGGTGTTAGAGACCTGCACATTTCTCCTTTTGATAATAGACAGGCCCTCTATGCTTCATTAGGGAAGAAATTATCAGTGCTCAGCTTTGACAGTGGCACCACTGTTCTCAATTATAATCTACAGGTTCCTGCTTGGTCCTGCTCATGGGATCGTAACAATACACATTACGTATATGCTGGACTACAGAATGGTTCTGTTCTGGTGTTTGACACGAGACAAACTGCAGGACCCTTAAAATATTTAGCTGGGTTAACTAGCAACCCTGTTCACAGTTTGCAGTCTCTTGCACAAACATCGAGTCTTCCTTCTGGTGCCAGAAGCATCCTATCCGCCTCTGCCATCGGGCCTTGTCAATGGAACATTGATTCTGAAGAACGGTTTGTTTTTCCCGAGCCTTATAATCCCGATGATTATGATCAAGGAGTTTGTATATCCCTTGCCTATTGCCTGAGCAGTGATGACATTGTTGTTTCATACCGTCCAAAGTTCAACTCCGCTGTGGAGGTGCCTCCTTCTCAATCATGGCCCCCTCCTACTTATGTTACTGGACAAGGAGTACAGGGTTCTCATGTATTGTTAAACAGAACTGACAGGGATAATTACCAAAAGATGGGTTCCTCGAATGCCAATGTCAGTGATATTCGACTACCAAAAAGTGTAATTATAGACACTCAGAATCAAAATAGATTATTTGCATCCGTAGATGAAGCTACATGCGATTTGGTCTTGCAAGAGTTGCCATCTTTTAGAACTATTCAACAATTCAAAATGCCTGCTCAGGTCCGCGATATTAGGTACTCACCTAGCCATGGAATGCTTGGTTGTTTAACTGAGAACTCATTGCAGCTATTCCGTACCAATCTCCAGTGA 1965 0.4331 MSFPFNNLPYFHIDLGNSDESEIPTREDLMDAGADPRFVNLVFNGHSGDEEEEEEEEEEEEDEDDEEYVPAVPSARVSHGLRNPTSEEVIVVLDDEGHNSVEDERNKRRRTEGGEASSSLPPIESADDSQETDWNRTEVDGLICPICMDAWTDDGDHHVCCLPCGHIYGMSCIKKWLKQRSNSGKCPQCNMKCSMKDVRKLYASRVVAVDEESQKRIQLLETKCASLQSKDGDWRKKEVGWKKREAALDFDVKNLRERNTYLEQLVLDMQSRQSGLMDASGNSQWGYESERNYNTMSHGKGSFCNFVFQKAFQLEGARIFDMDTYNQIVLIAHKPKAIGDVHLLSKMSLISPFEMQDIVLPSSANGVRDLHISPFDNRQALYASLGKKLSVLSFDSGTTVLNYNLQVPAWSCSWDRNNTHYVYAGLQNGSVLVFDTRQTAGPLKYLAGLTSNPVHSLQSLAQTSSLPSGARSILSASAIGPCQWNIDSEERFVFPEPYNPDDYDQGVCISLAYCLSSDDIVVSYRPKFNSAVEVPPSQSWPPPTYVTGQGVQGSHVLLNRTDRDNYQKMGSSNANVSDIRLPKSVIIDTQNQNRLFASVDEATCDLVLQELPSFRTIQQFKMPAQVRDIRYSPSHGMLGCLTENSLQLFRTNLQ 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04135 654 MobiDBLite consensus disorder prediction 40 133 - -
Vivi6g04135 654 MobiDBLite consensus disorder prediction 89 114 - -
Vivi6g04135 654 Gene3D - 318 529 IPR015943 GO:0005515
Vivi6g04135 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 241 IPR013083 -
Vivi6g04135 654 SMART ring_2 144 189 IPR001841 -
Vivi6g04135 654 SUPERFAMILY WD40 repeat-like 361 649 IPR036322 GO:0005515
Vivi6g04135 654 SUPERFAMILY RING/U-box 133 196 - -
Vivi6g04135 654 CDD mRING-C3HGC3_RFWD3 140 202 - -
Vivi6g04135 654 Pfam Ring finger domain 144 190 IPR001841 -
Vivi6g04135 654 ProSiteProfiles Zinc finger RING-type profile. 144 190 IPR001841 -
Vivi6g04135 654 MobiDBLite consensus disorder prediction 48 68 - -
Vivi6g04135 654 PANTHER RFWD3 PROTEIN 51 652 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04135 144 189 C3H Transcription Factor Family AT1G51930 42.553 2.85e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04135 K15691 - gmx:100818898 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04135 6 140137954 140143685 Vivi6g04135 6 140137954 140143685 ECH