Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04126 ATGTTGTTCCAAACAAAAACAATATGCATTTTGGTAACTATCATTGTTCTTAGTTCCTTTTCACCACTTGGATTAGCAATGTTGAACTTAACTCTTCCTGGAACTCACCCTGACCCTGATGCTGTTGCTCATGAAGTTCATAGGAAGGTGAATGCATCAATGGCAAGAAGACAAACACTATCATCCGGATCTGCATGCATGACAGGAAACCCGATCGACGACTGTTGGAAATGCGATCCAGAATGGCCAAACAACCGACAAAGGTTAGCCGATTGTGTAATCGGGTTCGGTCAGTATGCAAAAGGAGGAAAAGGTGGTGAATACTACGTTGTAACGGATTCATCGGACGATGATCCCGTTACACCAAAACCTGGTACATTAAGATATGCTGTGATAAAAAACGAACCGTTATGGATCGTATTTCCTAGTAACATGATGATTAAGCTGAAGCAAGAATTGATTTTTAATAGCTATAAAACCATTGATGGACGTGGTGCTGATGTTCATATTGTTGGAGGAGGATGCATTACTTTGCAGTTTATTAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCATCAGGAAACACAAACGTCCGATCTAGTCCAGAACACTATGGTTACAGAACATTATCCGACGGAGACGGAATTTCCATATTCGGATCAAAAGACATATGGATCGACCATTGCACACTCTCACATTGCAAAGACGGACTAATAGACGCAGTAATGGGATCGACAGGAATAACAATATCCAACAACTTCATGTCACACCACAACGAAGTCATGCTCCTCGGCCACAGTGACGACTACCTCCCTGACTCAGGAATGCAAGTCACAATCGCATTCAACCATTTCGGGGAGGAACTCGTTCAGAGGATGCCACGTTGTCGAAGAGGATACATCCATGTCGTCAACAACGATTTCACTCAATGGGAAATGTATGCCATTGGTGGAAGTGGTGAACCGACTATTAATAGTCAGGGAAATCGCTATGTCGCTCCTGTTAATCTTTTCGCAAAAGAGGTTACTAAGAGGGTTGAAACAGAACAGAATAAGTGGAAAGGATGGAATTGGAGATCTGAAGGTGATGTTATGGTTAATGGTGCATTCTTTGTTACATCTGGTGAAAGTCTTGAGGTTAAGTATGAGAAAGCTTTTAGTGTTGAACCTCAATCTGCTGATAGGATTGTTTTTCTTACCATGAATGCTGGTGTTCTTGGTAATGCAAGGGACAATAATGTGGGAATGTGGAGTAGAGGACCAAGCAGCACCGATGACGGTGTTTCAGATTCTGGCCCAGATTACACAGATGATATGTCGGGTGGCGGTGCACTAGTGGTGTTGTCGTCTTCTTTTACTATGTTGTGCTTCTTGTTGTCTTACAGAGTGATTCTGTTGACAGTGCTTCTATAA 1425 0.4189 MLFQTKTICILVTIIVLSSFSPLGLAMLNLTLPGTHPDPDAVAHEVHRKVNASMARRQTLSSGSACMTGNPIDDCWKCDPEWPNNRQRLADCVIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMMIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSKDIWIDHCTLSHCKDGLIDAVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEELVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYVAPVNLFAKEVTKRVETEQNKWKGWNWRSEGDVMVNGAFFVTSGESLEVKYEKAFSVEPQSADRIVFLTMNAGVLGNARDNNVGMWSRGPSSTDDGVSDSGPDYTDDMSGGGALVVLSSSFTMLCFLLSYRVILLTVLL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04126 474 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Vivi6g04126 474 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Vivi6g04126 474 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Vivi6g04126 474 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Vivi6g04126 474 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Vivi6g04126 474 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Vivi6g04126 474 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Vivi6g04126 474 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Vivi6g04126 474 Pfam Pectate lyase 150 329 IPR002022 -
Vivi6g04126 474 SUPERFAMILY Pectin lyase-like 65 399 IPR011050 -
Vivi6g04126 474 SMART amb_all 144 341 IPR002022 -
Vivi6g04126 474 FunFam Pectate lyase 69 411 - -
Vivi6g04126 474 Gene3D - 69 411 IPR012334 -
Vivi6g04126 474 PANTHER PECTATE LYASE 18-RELATED 34 412 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04126 Vivi-Chr6 140031397 140034933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04126 1 464 Polysaccharide Lyase AT3G53190 72.304 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04126 K01728 - gmx:100775595 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04126 6 140031397 140034933 Vivi6g04126 6 140031397 140034933 ECH
Vivi6g04126 6 140031397 140034933 Vivi1g07035 1 169107150 169111057 PCT