Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04090 ATGGCCAACCTTCCTTTCTTCATCTTCTTCTTTGTTCTAACTATAAACACTATATCACTAACAATCACTTACTCCTGTGACGACTCACTGTGGAGCTCTAGTCTCATAAATGATTACAATGTAACTCTTGTATTCAGGGTTGATAAAAAAAATTGTGGCAACTTTTCAACTATTCAAGAAGCCGTAAACAATGTGCCTGATTCAAGTTTACAATTTACTCTTGTGATTATTGATTCGGGCATCTACAGGGAGAAGGTAGTAGTTAATGAGAAAAAGACAAAGTTGATTATTCAAGGTCAAGGCTATCCTAATACAATTATAGAATGGGGTGATTTTGGAAATCGGACTGGAACCTTCGACAGTTACACTTTTGGTGTCTTTGCCTCAGAATTCATTGCCTACAATATCAGTTTTAAGAACACTTTTCCTCGACCTCCGTCACAAAGAGTTAAAGGAGCCCAGGCAGTTGCACTGAGGGCTAATGGAGACAAAGCAGCATTTTACGGATGTGGATTTTATGGTGAGCAAGACACCCTTCATGATGACCTAGGAAGACATTACTACAAAGGATGTTTCATTGAAGGGTCCATCGATTTTATATTCGGAAATGCAAGGTCACTTTATGAGAATTGTTTCTTAAACTCAATAGCAAACCCCGAGTGGGTTGGTGATGGAGGATATATCACAGCACAAGGCCAAGATTCATTGGCAGATAATTCTGGATTCTCCTTTGTCAACTGCAACATCAGTGGTACTGGAAGAATATTGCTTGGAAGACCTTGGAGACCATATGCCAAAGTCATTTTCTCAACCACTTACATGTCTACAGTTGTAAGTCCTATTGGATGGAATGACATGGTTGGCAATCTCTCAGCAAGCCAGACTGTATTTTTTGGAGAGCATAACTGCAAGGGACCTGGAGCAGAAACAAAATCCCCTCCAAGAGCCTTTTTTGGAAAGCAGCTCAAGGATGATGAAGTTGCTCCTTACATCAATATTTCATATATCGATGGAAGTGAATGGCTTCATCAGATTTAG 1038 0.3969 MANLPFFIFFFVLTINTISLTITYSCDDSLWSSSLINDYNVTLVFRVDKKNCGNFSTIQEAVNNVPDSSLQFTLVIIDSGIYREKVVVNEKKTKLIIQGQGYPNTIIEWGDFGNRTGTFDSYTFGVFASEFIAYNISFKNTFPRPPSQRVKGAQAVALRANGDKAAFYGCGFYGEQDTLHDDLGRHYYKGCFIEGSIDFIFGNARSLYENCFLNSIANPEWVGDGGYITAQGQDSLADNSGFSFVNCNISGTGRILLGRPWRPYAKVIFSTTYMSTVVSPIGWNDMVGNLSASQTVFFGEHNCKGPGAETKSPPRAFFGKQLKDDEVAPYINISYIDGSEWLHQI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04090 345 Gene3D - 39 345 IPR012334 -
Vivi6g04090 345 Pfam Pectinesterase 47 338 IPR000070 GO:0030599|GO:0042545
Vivi6g04090 345 ProSitePatterns Pectinesterase signature 2. 193 202 IPR033131 -
Vivi6g04090 345 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 343 - -
Vivi6g04090 345 SUPERFAMILY Pectin lyase-like 43 343 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04090 Vivi-Chr6 139236517 139239205 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04090 38 343 Carbohydrate Esterase AT1G05310 49.677 9.57e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04090 - - vvo:131614791 667.537