Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04085 ATGATTAACTTGCAAACCCTAGTTAAAACTCAAACGAAAGTTCAAAAGGAAGAGAGAGGTTGGAGCTTCTCTCTCATGGAGAAGGTAGTAGTTAATGAGAAAAAGACAAAGTTGATTATTCAAGGTCAAGGCTATCTTAATACAATTATAGAATGGGGTCATTTTGGAAATCTGACTGGAACCTTCGACAGTTACTCTTTTGCTGTCTTTGCCACAGAATTCACAGCCTACAATATCAGTTTTAAGAATACTTTTCCTCGACCTCCGTCACAAGGAGCTATCGGAGCACAGGCAGTTGCACTGAGAGCTAGTGGAGATAAAGCAGCATTTTACGGTTGTGGATTTTATGGTGCACAAGACACCCTTCATGATGACCTAGGAAGACATTATTACAAAGGATGTTTTATTCAAGGATCCATCGATTTTATATTCGGAAATGCAAGGTCACTTTATGAGGATTGTTATTTAAACTCTATAGCAAAACCCGAGTGGGTTGGAGATGGAGGATATATAACAGCCCAAGGACAGGAGTCATTGAAAGACAACTCTGGATTTTCTTTTGTCAACTGCAACATCAGTGGTACTGGGAAAATATTGCTTGGAAGACCTTGGAGACAATATGCCAAAGTTATTTTCTCTACCACCTATATGTCTGATGTTGTAAGTGCTATTGGATGGAATGACATGGTTGGCAATAAATCAGCAAGCCAGACAGTATTTTTTGGAGAGCACAACTGCAAGGGACCTGGAGCAAAAACAGCATCCCCTCCAAGAGCCTTTTTTGGAAAGCAGCTCAAGGATGATGAAGCTGCTCCTTACATCAATACTTCATATATTGATGGAAGTGAATGGCTTCATTAG 861 0.3995 MINLQTLVKTQTKVQKEERGWSFSLMEKVVVNEKKTKLIIQGQGYLNTIIEWGHFGNLTGTFDSYSFAVFATEFTAYNISFKNTFPRPPSQGAIGAQAVALRASGDKAAFYGCGFYGAQDTLHDDLGRHYYKGCFIQGSIDFIFGNARSLYEDCYLNSIAKPEWVGDGGYITAQGQESLKDNSGFSFVNCNISGTGKILLGRPWRQYAKVIFSTTYMSDVVSAIGWNDMVGNKSASQTVFFGEHNCKGPGAKTASPPRAFFGKQLKDDEAAPYINTSYIDGSEWLH 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04085 286 Gene3D - 25 286 IPR012334 -
Vivi6g04085 286 ProSitePatterns Pectinesterase signature 2. 136 145 IPR033131 -
Vivi6g04085 286 SUPERFAMILY Pectin lyase-like 27 285 IPR011050 -
Vivi6g04085 286 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 26 285 - -
Vivi6g04085 286 Pfam Pectinesterase 26 281 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04085 Vivi-Chr6 139147694 139149697 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04085 15 286 Carbohydrate Esterase AT1G05310 49.640 1.92e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04085 - - vvo:131614789 595.89