Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04082 ATGAGATTCAACAAAATCCACTTTTGGCTATCAAGCTTTGTCATGTTTCTCATTTCTATTATCATTGTTCATTACAGCACGCCACTTACCAACACCTATAACACTACTATTAATAGTTCTCAAGGTAGTTTCGGTGTTCAACTTGGCATATTAAACAAGTTTATAAAATTAAATGGTGTTCAAGATTTCGTGTCTTTGGTGGTATCAAGTATTGCACAGCATCATCATAGGGAGAAGCATAAGGAAAAACGCGACAAGGTCGAATGGACTTCTAAATCATTTTTAAATTGTAATGCGACCATTGTTTTCACGGTTGATTTAAAGGGTCATGCTAACTTTAGTAGCATTCAAAAAGCAGTTGATGCTGTTCCTGAATCTAGCTCTAATACCACTCTCATCATAATCAATTCTGGTATATACAGAGAGAAGATAGCGGTTCAAGCCAACAAAACAAATTTAATATTACAAGGTCAAGGATATCTTAATACAATCATAGAATGGAATGACACTTCAAATTCCACTGGTGGGACTTCCTATAGTTACTCATTTGCAGTCTTTGCTTCTAAGTTCTCTGCTTACAACATTAGCTTTAAGAACACTTCTCCTCCACCTTCACCAGGAGAGGTTGGAGCACAGGCAGTGGCGCTGAGAGTTACCGGTGATCAAGCCGCATTCTATGGCTGCGGTTTTTATGGCGCGCAGGACACACTCAATGATGACATGGGAAGACATTATTTTAAAGAATGTTTCATTCAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCACTTTATGAGGATTGCACCATAAACTCAATAGCAAAACAAGATTTAGGCGGTGTTGACGGGTCTATCACGGCGCAAGGACGACAATCATTAGAGGAACAAACAGGATTTTCGTTTGTGAATTGCAACATTGTTGGAAGTGGAAAAGTGTGGCTTGGAAGAGCTTGGGGACCATTTGCCACAGTTGTTTTTTCAACAACAAACATGTCTGATGTGGTAGCTCCTGAGGGATGGAACGATTGGAATGATGCATCTAGAGACCAGACTGTTTTCTTTGGAGAGTACCATTGTTCAGGAGTTGGAGCAAATTATACATCTAGAGTCTCTTATGCAAGACAACTCAGAGATTATGAAGCAATTTCATATATTAATGTTTCATATATTGATGGAAATGATTGGCTTCTTAACTATTTAACTTGA 1209 0.3813 MRFNKIHFWLSSFVMFLISIIIVHYSTPLTNTYNTTINSSQGSFGVQLGILNKFIKLNGVQDFVSLVVSSIAQHHHREKHKEKRDKVEWTSKSFLNCNATIVFTVDLKGHANFSSIQKAVDAVPESSSNTTLIIINSGIYREKIAVQANKTNLILQGQGYLNTIIEWNDTSNSTGGTSYSYSFAVFASKFSAYNISFKNTSPPPSPGEVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDMGRHYFKECFIQGSIDFIFGNARSLYEDCTINSIAKQDLGGVDGSITAQGRQSLEEQTGFSFVNCNIVGSGKVWLGRAWGPFATVVFSTTNMSDVVAPEGWNDWNDASRDQTVFFGEYHCSGVGANYTSRVSYARQLRDYEAISYINVSYIDGNDWLLNYLT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04082 402 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
Vivi6g04082 402 FunFam Pectinesterase 97 402 - -
Vivi6g04082 402 Gene3D - 97 401 IPR012334 -
Vivi6g04082 402 SUPERFAMILY Pectin lyase-like 101 397 IPR011050 -
Vivi6g04082 402 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 91 397 - -
Vivi6g04082 402 Pfam Pectinesterase 105 394 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04082 Vivi-Chr6 139057178 139059489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04082 95 397 Carbohydrate Esterase AT1G05310 55.882 3.93e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04082 - - gmx:100802034 592.808