Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04081 ATGGATGCATCCGTGAAGCCAGAATCGGAATCTAGAACCGGTTTGCTTGATCAGGAAATGCCAGCGGTGAATGGTTGCATTGTTTACACTCGAGGCAAAAGGTCTCTCAATCCGTGTAATGGTTTTTCCGAGGACGTTGATTGCAAGAGATTCAGGGAAGATGCGGAGACGCCGATTGAGTTGGAGAATGGAGTTGATTGTTGCACGGGGAGTAGAGATGATGGCGAGTGTGGTGATGCGATGAAGAGTGAGGTTCGTGAGGTTGCGGAAACGGCGGTCAAGCGGATTACGAGATCGGCGATGAAAGCGGAAGTTGAGTCCAGTAAGGTGCCGGTAAGGAGTTTCAAGCGGATTACACGATCTGCTATGAAAACGAAAGTTGAGTCCGATGGGAAGACGGTGAATGTGTTAGAACAAAGTGGTGCTGCAGTTGGTGCGGTGCCAGTGAGAAATTTGAAGCGGTTTACACGTTCAGCAATGAAAGAAAAGGTTGAGTCTCGTGAAGAGACTGTGAATGTGGTAGAACAACAAGGTGCTGCAGATGTAAGTGGTAAAGGCGATTGTGTGGTGCCAGTGAGAAATTCGAAGCGGCTTACACGTTCAGCTATGAAAGAAAAGGCTGAGTCTCGTGAAGAGACTGTGAATGTGGTAGAACAATTAGGTGCTGCAGATGTAAGTGGTAAAGGCAATGGTGTGGTGCAGGTGAGAAATTCGAAGCGGTTCACACGCTCAGCAGTGAAAGAAAAGGCTGAATCCTGTGAAGAGACGGTTACTGTTGTAAAACAACAAGGTGATGCAGTTGTAAGTGGTAAAAGCAATGGTGCAGTGCCAGTGAGAAATTTGAAACGGTTTACACGTTCAGCAATGAAAGAAAAGGGTGAGTCCTATGAGGAGACGTTGGCTGTGGTAAAACAACAAGATGCTGCAGTTGTAAGTGGCAAAGGCAATGATGGCCATGTGGTGCCAGTGAGAAATTTGAAGCGGTTTACACGATCAGCAATGAAAGAAAAGGCTGAGTCCTGTGAAGAGACACTCAATGTGGTAGAACAACAAGGTGCTGCAGTTGTAAGTGGTAAAGACAATGGTACGGTGGGGATGTTCAAGCGGTTTACCCGATCGGCGGGGAAAGTGACGGCTGAATCCGGTGAGGAGACAGTGACTGAGTTAGAACAGCAGGGTGCTGCCGTTGCAAGTGGTGAAGGTTCAGTGAGGATGTTCAAGCGGATTACACGATCAGCTTCCATGAAAGCAAATCCTGAGTCCGGTGAGGAAACAGTGACCAAGTTAGAAAAAAAAAGGGCCGCCGTTGTGGGTAATATCAATGGTGTGTTAGCTGCTCCGAGAAACAAGATGGAGTTGAAGATGTCAAAGAAGATTGTGGTTAATAAGAAGCCTACAACAGTCAAAGAGCTCTTGCATACCGGATTACTTGATGGCATCTCTGTGGTTTACGTTGGCGGCCTCAAGAAGGCACTAGGATTAAAGGGTGTTATAAGTAATGGGGGAATATTGTGCTCGTGCTGTCTCTGTAAAGGAAGCAGGGTTATTCCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAAGAGAGCAGTAGAGTATATATGCCTTGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCGTGCAGGAGAGCTCCCCTGCATGATTTGGAGGCAACAATTCAAAATTTTGTTCGCTCTCCACCCGAGGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTCTCCCTTCTTCTTGTATGGAAAGAGCGGGACCTATATGCTCTTCTTGTGCAGAATCATGTAAACCTGAAGAAAGCTCGAAGAATGTAGTTGGCAAAAGAGTCAGGTCATCAAAAAGGGACAACAGCTCAAATTCTTCCAAGAGTGCTTCTGTGCCTATTCTACCCCAGAAGAAAATTACTCTGAAGACGAAAAAGAATGTTATTACCAGGTCACTCTCCGTAAAGTTGAAGACCACTTCAAATTGTTTATCGAAGAGTCAATTGAAGATAACTAAGAAGGATTTTCGGTTGCACAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCAGGCGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTTTGTGTAGATGTTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAATTATCAATATCGCTCTCCAAGGACCGAAAATACTCTGCAAAGGACAATGATGATTTATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTATATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTCGCATACAATAACAATGCTTTTGCTGCTGGAAGAGTTGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAGGTCTGGCTTTGGTCCACGTACAATAATACTGTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGGGGGATCACAAGATGGCATTTCTAAAGGAATTGCCAAAAGGTAACTGGCTTTGCAGCGATGATTGCAAGAGAATACATTCTACTTTGGAGAATGTTTTAGTTAGAGGGGCTGAGAGACTCCCTCAGTCTCTCTTGTCTGTTATAGAGAAAAAGCATGGAGAAAAAGGATTGGATCCCATCAATGATATTAATGTGAGTTGGAGGCTTCTTAGTGGAAAAAATGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTCTCTATCTTTCATCAATGCTTTGATCCTATAGTTGATGAAGCCAGCGGACGCGACCTTATTAGAGCAATGGTTTATGGAAAGAGTGTGCGGGGTCAAGAATTTAGAGGAATGCATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCCGGCATGCTTCGAATCTTCGGCACTGATATTGCCGAACTTCCTTTAGTTGCAACAAGTAACAGTCATCATGGGAAGGGCTACTTCCAAGCACTCTTCTCCTGCATCGAACGGCTACTGGCTTTTATGAAAGTAAAGAATCTTGTGCTACCAGCTGCAGAAGAAGCACTGTCCATATGGACAGATAAATTTGGGTTTAGCAAGATTAAACCAGACGAGCTTGCCAGCTACAGAAGGAACTGCAACCAATTTGTGAACTTCAAAGGGACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAATCATCAATAATCAACCCCCACAAATTTTTATCGAGAAAAAGTCAATCATGGAAGCGGAAACCTCGTAG 3474 0.4416 MDASVKPESESRTGLLDQEMPAVNGCIVYTRGKRSLNPCNGFSEDVDCKRFREDAETPIELENGVDCCTGSRDDGECGDAMKSEVREVAETAVKRITRSAMKAEVESSKVPVRSFKRITRSAMKTKVESDGKTVNVLEQSGAAVGAVPVRNLKRFTRSAMKEKVESREETVNVVEQQGAADVSGKGDCVVPVRNSKRLTRSAMKEKAESREETVNVVEQLGAADVSGKGNGVVQVRNSKRFTRSAVKEKAESCEETVTVVKQQGDAVVSGKSNGAVPVRNLKRFTRSAMKEKGESYEETLAVVKQQDAAVVSGKGNDGHVVPVRNLKRFTRSAMKEKAESCEETLNVVEQQGAAVVSGKDNGTVGMFKRFTRSAGKVTAESGEETVTELEQQGAAVASGEGSVRMFKRITRSASMKANPESGEETVTKLEKKRAAVVGNINGVLAAPRNKMELKMSKKIVVNKKPTTVKELLHTGLLDGISVVYVGGLKKALGLKGVISNGGILCSCCLCKGSRVIPPSQFEIHACKQYKRAVEYICLENGKSLLDLLRACRRAPLHDLEATIQNFVRSPPEEKYFTCKRCKGCLPSSCMERAGPICSSCAESCKPEESSKNVVGKRVRSSKRDNSSNSSKSASVPILPQKKITLKTKKNVITRSLSVKLKTTSNCLSKSQLKITKKDFRLHKLVFEENGLPDGTEVAYYAGGQKLLEGFKMGSGILCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSAKDNDDLCVVCWDGGNLLLCDGCPRAFHKECASISSIPRGDWYCQFCQNMFQREKFVAYNNNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLGDHKMAFLKELPKGNWLCSDDCKRIHSTLENVLVRGAERLPQSLLSVIEKKHGEKGLDPINDINVSWRLLSGKNASPETRPLLLEAVSIFHQCFDPIVDEASGRDLIRAMVYGKSVRGQEFRGMHCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNSHHGKGYFQALFSCIERLLAFMKVKNLVLPAAEEALSIWTDKFGFSKIKPDELASYRRNCNQFVNFKGTNMLHKMVPPCRIINNQPPQIFIEKKSIMEAETS 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04081 1157 SUPERFAMILY FYVE/PHD zinc finger 763 821 IPR011011 -
Vivi6g04081 1157 Coils Coil 331 351 - -
Vivi6g04081 1157 ProSitePatterns Zinc finger PHD-type signature. 776 815 IPR019786 -
Vivi6g04081 1157 SMART PHD_3 775 816 IPR001965 -
Vivi6g04081 1157 SMART PHD_3 863 920 IPR001965 -
Vivi6g04081 1157 Gene3D - 962 1131 - -
Vivi6g04081 1157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 860 922 IPR013083 -
Vivi6g04081 1157 Pfam Tify domain binding domain 496 551 IPR032308 -
Vivi6g04081 1157 Pfam Tify domain binding domain 713 757 IPR032308 -
Vivi6g04081 1157 Pfam PHD-finger 776 817 IPR019787 -
Vivi6g04081 1157 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 762 839 - -
Vivi6g04081 1157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 761 859 IPR013083 -
Vivi6g04081 1157 PANTHER AUTOIMMUNE REGULATOR 195 1130 - -
Vivi6g04081 1157 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1019 1105 IPR016181 -
Vivi6g04081 1157 CDD PHD1_AIRE 775 815 - -
Vivi6g04081 1157 ProSiteProfiles Zinc finger PHD-type profile. 773 818 IPR019787 -
Vivi6g04081 1157 MobiDBLite consensus disorder prediction 615 635 - -
Vivi6g04081 1157 SUPERFAMILY FYVE/PHD zinc finger 854 917 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04081 Vivi-Chr6 139045581 139056996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04081 457 1138 PHD Transcription Factor Family AT2G36720 52.335 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi6g04081 TDBD 6.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04081 - - psat:127125742 1928.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04081 6 139045581 139056996 Vivi1g07097 1 171970403 171979422 PCT