Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04080 ATGGATGCATCCGTGAAGCCAGAATCGGAATCTAGAACCGGTTTGCTTGATCAGGAAATGCCAGCGGTGAATGGTTGCATTGTTTACACTCGAGGCAAAAGGTCTCTCAATCCGTGTAATGGTTTTTCCGAGGACGTTGATTGCAAGAGATTCAGGGAAGATGCGGAGACGCCGATTGAGTTGGAGAATGGAGTTGATTGTTGCACGGGGAGTAGAGATGATGGCGAGTGTGGTGATGCGATGAAGAGTGAGGTTCGTGAGGTTGCGGAAACGGCGGTCAAGCGGATTACGAGATCGGCGATGAAAGCGGAAGTTGAGTCCAGTAAGGTGCCGGTAAGGAGTTTCAAGCGGATTACACGATCTGCTATGAAAACGAAAGTTGAGTCCGATGGGAAGACGGTGAATGTGTTAGAACAAAGTGGTGCTGCAGTTGGTGCGGTGCCAGTGAGAAATTTGAAGCGGTTTACACGTTCAGCAATGAAAGAAAAGGTTGAGTCTCGTGAAGAGACTGTGAATGTGGTAGAACAACAAGGTGCTGCAGATGTAAGTGGTAAAGGCGATTGTGTGGTGCCAGTGAGAAATTCGAAGCGGCTTACACGTTCAGCTATGAAAGAAAAGGCTGAGTCTCGTGAAGAGACTGTGAATGTGGTAGAACAATTAGGTGCTGCAGATGTAAGTGGTAAAGGCAATGGTGTGGTGCAGGTGAGAAATTCGAAGCGGTTCACACGCTCAGCAGTGAAAGAAAAGGCTGAATCCTGTGAAGAGACGGTTACTGTTGTAAAACAACAAGGTGATGCAGTTGTAAGTGGTAAAAGCAATGGTGCAGTGCCAGTGAGAAATTTGAAACGGTTTACACGTTCAGCAATGAAAGAAAAGGGTGAGTCCTATGAGGAGACGTTGGCTGTGGTAAAACAACAAGATGCTGCAGTTGTAAGTGGCAAAGGCAATGATGGCCATGTGGTGCCAGTGAGAAATTTGAAGCGGTTTACACGATCAGCAATGAAAGAAAAGGCTGAGTCCTGTGAAGAGACACTCAATGTGGTAGAACAACAAGGTGCTGCAGTTGTAAGTGGTAAAGACAATGGTACGGTGGGGATGTTCAAGCGGTTTACCCGATCGGCGGGGAAAGTGACGGCTGAATCCGGTGAGGAGACAGTGACTGAGTTAGAACAGCAGGGTGCTGCCGTTGCAAGTGGTGAAGGTTCAGTGAGGATGTTCAAGCGGATTACACGATCAGCTTCCATGAAAGCAAATCCTGAGTCCGGTGAGGAAACAGTGACCAAGTTAGAAAAAAAAAGGGCCGCCGTTGTGGGTAATATCAATGGTGTGTTAGCTGCTCCGAGAAACAAGATGGAGTTGAAGATGTCAAAGAAGATTGTGGTTAATAAGAAGCCTACAACAGTCAAAGAGCTCTTGCATACCGGATTACTTGATGGCATCTCTGTGGTTTACGTTGGCGGCCTCAAGAAGGCACTAGGATTAAAGGGTGTTATAAGTAATGGGGGAATATTGTGCTCGTGCTGTCTCTGTAAAGGAAGCAGGGTTATTCCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAAGAGAGCAGTAGAGTATATATGCCTTGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCGTGCAGGAGAGCTCCCCTGCATGATTTGGAGGCAACAATTCAAAATTTTGTTCGCTCTCCACCCGAGGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTCTCCCTTCTTCTTGTATGGAAAGAGCGGGACCTATATGCTCTTCTTGTGCAGAATCATGTAAACCTGAAGAAAGCTCGAAGAATGTAGTTGGCAAAAGAGTCAGGTCCCCTAGGCCAGTGTTGGTCTCCAAGTCATCCTGTGCTACTGAGCTGTCAATTTCTTCAAAAAGTAAGAGACATGGGAAGAAAAGAACAAAGTCATCAAAAAGGGACAACAGCTCAAATTCTTCCAAGAGTGCTTCTGTGCCTATTCTACCCCAGAAGAAAATTACTCTGAAGACGAAAAAGAATGTTATTACCAGGTCACTCTCCGTAAAGTTGAAGACCACTTCAAATTGTTTATCGAAGAGTCAATTGAAGATAACTAAGAAGGATTTTCGGTTGCACAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCAGGCGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTTTGTGTAGATGTTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAATTATCAATATCGCTCTCCAAGGACCGAAAATACTCTGCAAAGGACAATGATGATTTATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTATATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTCGCATACAATAACAATGCTTTTGCTGCTGGAAGAGTTGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAGGTCTGGCTTTGGTCCACGTACAATAATACTGTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGGGGGATCACAAGATGGCATTTCTAAAGGAATTGCCAAAAGGTAACTGGCTTTGCAGCGATGATTGCAAGAGAATACATTCTACTTTGGAGAATGTTTTAGTTAGAGGGGCTGAGAGACTCCCTCAGTCTCTCTTGTCTGTTATAGAGAAAAAGCATGGAGAAAAAGGATTGGATCCCATCAATGATATTAATGTGAGTTGGAGGCTTCTTAGTGGAAAAAATGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTCTCTATCTTTCATCAATGCTTTGATCCTATAGTTGATGAAGCCAGCGGACGCGACCTTATTAGAGCAATGGTTTATGGAAAGAGTGTGCGGGGTCAAGAATTTAGAGGAATGCATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCCGGCATGCTTCGAATCTTCGGCACTGATATTGCCGAACTTCCTTTAGTTGCAACAAGTAACAGTCATCATGGGAAGGGCTACTTCCAAGCACTCTTCTCCTGCATCGAACGGCTACTGGCTTTTATGAAAGTAAAGAATCTTGTGCTACCAGCTGCAGAAGAAGCACTGTCCATATGGACAGATAAATTTGGGTTTAGCAAGATTAAACCAGACGAGCTTGCCAGCTACAGAAGGAACTGCAACCAATTTGTGAACTTCAAAGGGACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAATCATCAATAATCAACCCCCACAAATTTTTATCGAGAAAAAGTCAATCATGGAAGCGGAAACCTCGTAG 3567 0.4415 MDASVKPESESRTGLLDQEMPAVNGCIVYTRGKRSLNPCNGFSEDVDCKRFREDAETPIELENGVDCCTGSRDDGECGDAMKSEVREVAETAVKRITRSAMKAEVESSKVPVRSFKRITRSAMKTKVESDGKTVNVLEQSGAAVGAVPVRNLKRFTRSAMKEKVESREETVNVVEQQGAADVSGKGDCVVPVRNSKRLTRSAMKEKAESREETVNVVEQLGAADVSGKGNGVVQVRNSKRFTRSAVKEKAESCEETVTVVKQQGDAVVSGKSNGAVPVRNLKRFTRSAMKEKGESYEETLAVVKQQDAAVVSGKGNDGHVVPVRNLKRFTRSAMKEKAESCEETLNVVEQQGAAVVSGKDNGTVGMFKRFTRSAGKVTAESGEETVTELEQQGAAVASGEGSVRMFKRITRSASMKANPESGEETVTKLEKKRAAVVGNINGVLAAPRNKMELKMSKKIVVNKKPTTVKELLHTGLLDGISVVYVGGLKKALGLKGVISNGGILCSCCLCKGSRVIPPSQFEIHACKQYKRAVEYICLENGKSLLDLLRACRRAPLHDLEATIQNFVRSPPEEKYFTCKRCKGCLPSSCMERAGPICSSCAESCKPEESSKNVVGKRVRSPRPVLVSKSSCATELSISSKSKRHGKKRTKSSKRDNSSNSSKSASVPILPQKKITLKTKKNVITRSLSVKLKTTSNCLSKSQLKITKKDFRLHKLVFEENGLPDGTEVAYYAGGQKLLEGFKMGSGILCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSAKDNDDLCVVCWDGGNLLLCDGCPRAFHKECASISSIPRGDWYCQFCQNMFQREKFVAYNNNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLGDHKMAFLKELPKGNWLCSDDCKRIHSTLENVLVRGAERLPQSLLSVIEKKHGEKGLDPINDINVSWRLLSGKNASPETRPLLLEAVSIFHQCFDPIVDEASGRDLIRAMVYGKSVRGQEFRGMHCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNSHHGKGYFQALFSCIERLLAFMKVKNLVLPAAEEALSIWTDKFGFSKIKPDELASYRRNCNQFVNFKGTNMLHKMVPPCRIINNQPPQIFIEKKSIMEAETS 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04080 1188 SUPERFAMILY FYVE/PHD zinc finger 794 852 IPR011011 -
Vivi6g04080 1188 PANTHER AUTOIMMUNE REGULATOR 195 1161 - -
Vivi6g04080 1188 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1050 1136 IPR016181 -
Vivi6g04080 1188 SMART PHD_3 894 951 IPR001965 -
Vivi6g04080 1188 SMART PHD_3 806 847 IPR001965 -
Vivi6g04080 1188 MobiDBLite consensus disorder prediction 635 666 - -
Vivi6g04080 1188 Coils Coil 331 351 - -
Vivi6g04080 1188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 890 IPR013083 -
Vivi6g04080 1188 ProSitePatterns Zinc finger PHD-type signature. 807 846 IPR019786 -
Vivi6g04080 1188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 891 953 IPR013083 -
Vivi6g04080 1188 SUPERFAMILY FYVE/PHD zinc finger 885 948 IPR011011 -
Vivi6g04080 1188 CDD PHD1_AIRE 806 846 - -
Vivi6g04080 1188 ProSiteProfiles Zinc finger PHD-type profile. 804 849 IPR019787 -
Vivi6g04080 1188 Pfam PHD-finger 807 848 IPR019787 -
Vivi6g04080 1188 Gene3D - 993 1162 - -
Vivi6g04080 1188 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 793 870 - -
Vivi6g04080 1188 Pfam Tify domain binding domain 496 551 IPR032308 -
Vivi6g04080 1188 Pfam Tify domain binding domain 744 788 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04080 Vivi-Chr6 139045581 139056996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04080 457 1169 PHD Transcription Factor Family AT2G36720 52.257 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi6g04080 TDBD 6.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04080 - - psat:127125742 1994.16