Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04068 ATGGGGGAGGAAAGTTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGACCCAGAACCAGTTACTGGGTCAATTACCAATGAGGGTTTGAACTTGGATGATTGGATTGAGGAGCCTCTTCAGCGAATTAGTGAAGCTGCTGCGAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAGCTTCCGATTTCTCCACCTTATCCTCAACAAGTTCATCGCGTTCTACCTCATAGTTCTTATGCTCAAGTTCATCAGATTATACCTGAAACTGCGCATCATATTTATATCCCGCCTGAAGCTCGCAATATCTCTATTGAGTTGAACAATTTTTTGGTGAACTCGAGTAATGGAGCGGGGTTACAGGCTGGGGAAGGAAGTGTGGCGGCTGTGGAGAGAATGGAGGAAGTGGAGGAGCCGTTGAAAGCGTGTGAGAGCAACAATGGTGTTATGGAGGATGAGATGTTGCAGAAGAAGGATGATGTTGAAAAGACTGGTGGCTGTGATGGGGACTTTTTTGATTGTAATATCTGTTTGGACTTGGCCAAGGAGCCTGTTTTGACCTGTTGCGGTCATCTGTTTTGTTGGCAGTGCCTATATCGTTGGCTGCATCTGCATTCAGATGCTAAGGAGTGTCCAGTTTGCAAGGGTGAGGTGACAATTAAGAGTGTTACTCCCATATATGGTCGTGGGAACAATGCTCGTGTTCTTGAGGAGGATTCCACTCTTAAAATTCCTCCTAGGCCACAAGCAAAGCGTGTTGAAAGTCTGAGACAAACCATTATGAGAAACGCATCTGCACTCCCTGTAGAGGAGATGATTCGGCGTCTTGGAAACAGAATTGATCTCACTCGGGATCTAGTTCAGCCAAATGAAACAGAAAATGCCCGTGGAACAGTAGAGAGAACTACCTCCTTACTAAGTAGGTTTTTGACATCTCGAGGCATGAGGAGAGAGCAGATGCCTGTGGCACCACCGGAAGATGTTGCAGGTTTGAATCAGAATAACATTAATGGTGCTGACTTAGGAGGGGATAACCGCAGGGTGCAATCTCTTTTGCTTCGAAGATCACAATCACATAGAGCAACACTTTCTAGTCTTTCATCAGCATTGACTTCTGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCAACCCATTAGGCAGAAACCAAGAACAACCACCTACTTCAGTTGATGACAGGGATTCCTTTTCAAGCATTGCCGCAGTCATAAATTCGGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTAACCTCTTCTAGGAGGAGAGCTGATGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGGGCTCCAAGGCGCAGACGTCTGAACTAA 1371 0.4617 MGEESSDAMNLDLNLGPDPEPVTGSITNEGLNLDDWIEEPLQRISEAAARLRGRQRWRWRQLPISPPYPQQVHRVLPHSSYAQVHQIIPETAHHIYIPPEARNISIELNNFLVNSSNGAGLQAGEGSVAAVERMEEVEEPLKACESNNGVMEDEMLQKKDDVEKTGGCDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKSVTPIYGRGNNARVLEEDSTLKIPPRPQAKRVESLRQTIMRNASALPVEEMIRRLGNRIDLTRDLVQPNETENARGTVERTTSLLSRFLTSRGMRREQMPVAPPEDVAGLNQNNINGADLGGDNRRVQSLLLRRSQSHRATLSSLSSALTSAERLVEAYFRSNPLGRNQEQPPTSVDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRADASRLSDVDSGDSRAPRRRRLN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04068 456 Pfam Zinc finger, C3HC4 type (RING finger) 175 215 - -
Vivi6g04068 456 SMART ring_2 175 215 IPR001841 -
Vivi6g04068 456 MobiDBLite consensus disorder prediction 428 456 - -
Vivi6g04068 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 243 IPR013083 -
Vivi6g04068 456 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Vivi6g04068 456 CDD RING-HC_RNF5-like 173 216 - -
Vivi6g04068 456 SUPERFAMILY RING/U-box 171 228 - -
Vivi6g04068 456 MobiDBLite consensus disorder prediction 427 456 - -
Vivi6g04068 456 ProSitePatterns Zinc finger RING-type signature. 190 199 IPR017907 -
Vivi6g04068 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 156 322 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04068 Vivi-Chr6 138261477 138263702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04068 1 447 C3H Transcription Factor Family AT3G58030 51.509 3.99e-134 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04068 K10666 - gmx:100811099 629.402