Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04065 ATGGAACTAGCTTTGAGCTTAGGCGACACTCCAAAACCATTCTCTCTCTTTCAAAAATCCTCAGACCAAAAAAACACTTCCTCAGATCCACTTATCCAACTCAACCTTCTTCCTTCAACTCCAGTTCTCCTTCCCCATCCTTCTCCAAACCTTCGAATTCCATGGCTCAACGATGCACTCGGAGTTGAACCGGCGAGGATGTCGAGTGTAAACAGATTCCGGCTGGCGGCGTCGGTTGAAGATATTACCGACGAAGGAGCTGCGGTTTCATCACCGAATAGCGCGGTGTCATCTTTTCAGATGGATTTCTCTATCATGAACGGTAATAATGGAAATGCTGCTGAGGGTGCAGAAAGAAATAATAGTCGTGAGAGAGGTGCAGATAGCGATGATGAAGAAAATGGTTCCACTAGAAAGAAACTCAGACTCACTAAAGAACAGTCAGCTTTCCTTGAAGATAGCTTCAAAGAACACACCACTCTCAATCCTAAACAAAAACTTGCTCTTGCAAAACAGTTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAAACGGAAGTAGACTGTGAGTACTTAAAAAAATGTTGTGAGACATTAACAGAAGAGAATAGAAGATTACAAAAGGAACTGCAAGAATTAAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAGCGTCCAGCTACTACTCTCACTATGTGTCCATCTTGTGAAAGGGTTGCCACCAACACCACCGGAGCCACCGCCGGAGCTAAACAAACCGCCTCGATCGCCGCTGGAGGGCGCGGCGAACAATAA 831 0.444 MELALSLGDTPKPFSLFQKSSDQKNTSSDPLIQLNLLPSTPVLLPHPSPNLRIPWLNDALGVEPARMSSVNRFRLAASVEDITDEGAAVSSPNSAVSSFQMDFSIMNGNNGNAAEGAERNNSRERGADSDDEENGSTRKKLRLTKEQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRRLQKELQELRALKTSQPFYMQRPATTLTMCPSCERVATNTTGATAGAKQTASIAAGGRGEQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04065 276 MobiDBLite consensus disorder prediction 256 276 - -
Vivi6g04065 276 CDD homeodomain 138 195 IPR001356 GO:0003677
Vivi6g04065 276 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Vivi6g04065 276 MobiDBLite consensus disorder prediction 107 141 - -
Vivi6g04065 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 20 264 - -
Vivi6g04065 276 FunFam Homeobox-leucine zipper protein 18 122 199 - -
Vivi6g04065 276 Coils Coil 200 230 - -
Vivi6g04065 276 Gene3D - 130 199 - -
Vivi6g04065 276 SMART HOX_1 136 198 IPR001356 GO:0003677
Vivi6g04065 276 SUPERFAMILY Homeodomain-like 135 203 IPR009057 -
Vivi6g04065 276 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Vivi6g04065 276 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Vivi6g04065 276 MobiDBLite consensus disorder prediction 118 141 - -
Vivi6g04065 276 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355|GO:0043565
Vivi6g04065 276 Pfam Homeodomain 138 192 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04065 Vivi-Chr6 138207570 138209278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04065 128 251 Homeobox Transcription Factor Family AT4G37790 83.871 5.22e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi6g04065 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04065 K09338 - gmx:100810885 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04065 6 138207570 138209278 Vivi6g04065 6 138207570 138209278 ECH
Vivi6g04065 6 138207570 138209278 Vivi1g07417 1 188550490 188552189 PCT