Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04054 ATGGCTCCTGGAGGCAGCATTTTCAAAGAAGTTCTTGAGTCTCACCTGATGTCTTCTTCGGATTATGGGACCCCCAAGGCAAAATCCGAGGCCAAGATTAATAGTACACTTACAAAATCTACTAGTGCTGGGTTGCATGGAAAGAACGGAACTAGTTCGAAGAATGGTGTGCATGATTTACTCGGGTGCCCTGTCTGCAAGAATTTAATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACATTATGCTCGAGTTGTAAAATTGAAGTCCAAAATCTCTGCCCAACATGTCATCATGATCTTGGAAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCGGAATCTTTGGAGCTTCCTTGCCGATATCAGAGTCTAGGTTGTAACGATATTTTCCCTTACTATGCTAAGCTTAAACACGAGCAAAGTTGCGGATTTCGTCCATACAATTGCCCCTATGCTGGATCTGAGTGTTCCGTGATGGGTGACATTCCAACTCTTGTTGCTCATCTAAAAGATGAACACAAGGTTGATATGCACGATGGATTCACCTTCAATCATCGATACGTCAAAACAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACCGTTTTCAATTGTTACGGACGACATTTCTGCTTGCACTTTGAGGCTTTCCAGCTTGGCACAGCTCCCGTTTTTATGGCCTTCTTACGGTTCATGGGCGATGACAACGAGGAGAAGAAATTCAGCTACAGTTTAGAAGTCGGTGCAAACGGGCGCAAACTTATATGGCAAGGAATCCCTCGGAGCATTCGTGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGGACTTATTATTCAGAGGAATCAAGCCCTTTATTTTTCTGGTGGCGATAAACAGGAGTTGAAGTTGAGAATCACGGGTCGAATATGGAAAGAAGATTGA 936 0.4306 MAPGGSIFKEVLESHLMSSSDYGTPKAKSEAKINSTLTKSTSAGLHGKNGTSSKNGVHDLLGCPVCKNLMYPPIHQCPNGHTLCSSCKIEVQNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQSCGFRPYNCPYAGSECSVMGDIPTLVAHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGRHFCLHFEAFQLGTAPVFMAFLRFMGDDNEEKKFSYSLEVGANGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04054 311 ProSiteProfiles Zinc finger SIAH-type profile. 116 176 IPR013010 GO:0008270
Vivi6g04054 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 169 IPR013083 -
Vivi6g04054 311 ProSiteProfiles Zinc finger RING-type profile. 63 99 IPR001841 -
Vivi6g04054 311 FunFam E3 ubiquitin-protein ligase SINAT3 113 171 - -
Vivi6g04054 311 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 304 IPR008974 GO:0005515
Vivi6g04054 311 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 310 - -
Vivi6g04054 311 Pfam Seven in absentia protein family 105 304 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vivi6g04054 311 SUPERFAMILY TRAF domain-like 116 308 - -
Vivi6g04054 311 FunFam E3 ubiquitin-protein ligase SINAT5-like 172 304 - -
Vivi6g04054 311 SUPERFAMILY RING/U-box 56 105 - -
Vivi6g04054 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 115 IPR013083 -
Vivi6g04054 311 CDD RING-HC_SIAHs 61 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04054 Vivi-Chr6 138084607 138087417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04054 1 311 C3H Transcription Factor Family AT2G41980 78.457 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04054 K04506 - gmx:100813966 580.482