Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04036 ATGTCACTTCTCTCCAATTTCCTTCCCTCCCTTTTCCTTCTCCTCATTTTCCCCTCCTTTTCCTTCTCCGCCACACCATGTCCCCTCAACATAACCCTCCTCCGCCACATCGGCGACGGCTCCCGACCTTCCACCACCTCCGACACCCAGTGCCACTACATCCTCCAAGCCCTCCACCTCGTCCAAGCCGACTACCTCCACCGCACCGGCCTCTTCGTCCCACCTCCCAACACCTCCGAATCATGCTGGACCTCTTTCCAATCCTTCATCGACGAATTTCAACCGAATTTCAACATCCGCTCCTCGTGCGGCTTCCAAACCTCGTGGATCTCTCAAGGCTGCATGAACATCACAACCAAACAAGAATTCGAACAACAGGTTTCGTTACCGGCGCTTCAATCTCTTCAATCCAACTGTAACGTGTCTCTCGATAACAACGCTCCTTGCGCTCTCTGCACCGCTAAGCGTTCTGAAGTTCTTACTTCGTTGACCGGAGTAACCGTCAGTAACGTCTCCGACTGTAGATCTTATACCGCGATTTACGCGGCTTCGCTCTCCGATCAGTTTGGTCCTACTAACATCGGGACTGCTAAGTGTTTGTTCGGCCTCGATTTTTCGTCGGCTTCGGGTTCTAGCAGTAACCATCGCACCATTGTCATTGTGCTTGTTACTGTTTTTGGTTTTCTTGGATTGTTATTGTTAGGTGGTTTTTGGGGTTATTTTAGATATAAGAAGAAAAAGAGTGCGAATTCGAAGGAGACTGTTATAGAGTTAGGTTCTGCTTTGGATAATATGAACCAGAGTACTACTTTGATTAGGTTTGATTTTGGTGAGATTAAGAAAGCAACTAGGAATTTTGCTAGGGATAATATAATTGGAAGTGGTGGTTATGGAAATGTTTATAAAGGGTTATTAAACGATGGAAGTGAAGTTGCGATGAAAAGGTTTAAGAATTGTTCGGTTGCTGGTGATGCTAGTTTTAAGCACGAAGTGGAAGTTATTGCGAGTGTTAGACATGTTAATCTTGTTGCTTTGAGAGGCTATTGTACTGCTACTACTAATTTAGAAGGTCATCAGAGGATTATTGTTACTGATTTGATGGAGAATGGGAGTCTTTATGATCATTTGTTTGGTTCTTCGAAGAAGAAATTGAGTTGGCCGATTCGTCAGAAGATTGCGCTTGGTACGGCTAGGGGTTTGGCGTATTTGCATTATGGTGCTCAGCCTTCGATCATTCATAGGGATATTAAAGCGAGTAATATACTTTTGGATGAGAAGTTTGAAGCGAAGGTGGCGGATTTTGGATTGGCGAAGTTTAATCCTGAGGGTATGACTCATATGAGTACTAGGGTTGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAGTTGACAGAGAGGAGTGACGTGTTTAGTTTCGGTGTTTTGCTTCTCGAGCTGTTGAGTGGGAGAAAGGCGCTTGAAACGAACGAGGATGGTCAACCGTCGGCTTTCAGCGACTTGGCTTGGTCGTTGGTTAGAAACAATAGGGCTATGGATGTTGTTGAAGACGGTATGCCAGAATCTGGAACACCGGAAATTCTTGAGAAGTATGTGCTGGTTGCTGTTTTATGTTCTCATCCTCAGTTATATGCAAGGCCAACGATGGATCAGGTTGTTAAAATGTTGGAAACAGACGATGAACCGATGCCCTCGGTGGTTGAAAGGCCAATTCCTTTTATCTCAGGGAGACTTGATATCGAGAAATCTGCTAGCAGTAACTCAGGTCAGCTCTGCAGTCCAACCGGTTATCAAGCATATACATTGCAATTACAAAATCGTCGCGCTTCTACTTGTAATGAAGAAGACGAAGAAACCTCCGAGCGGGTTTCTAATTGTGTGGAAGCAGAAGGAAACTCTGAACGTGTTTCGAATTGTAAGGAAGAGGAAGGAAAATCTGAACGCGGGTCTGTAAGCAAAGATTGA 1977 0.4507 MSLLSNFLPSLFLLLIFPSFSFSATPCPLNITLLRHIGDGSRPSTTSDTQCHYILQALHLVQADYLHRTGLFVPPPNTSESCWTSFQSFIDEFQPNFNIRSSCGFQTSWISQGCMNITTKQEFEQQVSLPALQSLQSNCNVSLDNNAPCALCTAKRSEVLTSLTGVTVSNVSDCRSYTAIYAASLSDQFGPTNIGTAKCLFGLDFSSASGSSSNHRTIVIVLVTVFGFLGLLLLGGFWGYFRYKKKKSANSKETVIELGSALDNMNQSTTLIRFDFGEIKKATRNFARDNIIGSGGYGNVYKGLLNDGSEVAMKRFKNCSVAGDASFKHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKKLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVLLLELLSGRKALETNEDGQPSAFSDLAWSLVRNNRAMDVVEDGMPESGTPEILEKYVLVAVLCSHPQLYARPTMDQVVKMLETDDEPMPSVVERPIPFISGRLDIEKSASSNSGQLCSPTGYQAYTLQLQNRRASTCNEEDEETSERVSNCVEAEGNSERVSNCKEEEGKSERGSVSKD 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04036 658 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 115 617 - -
Vivi6g04036 658 SUPERFAMILY Protein kinase-like (PK-like) 264 562 IPR011009 -
Vivi6g04036 658 Pfam SPARK 24 174 IPR043891 -
Vivi6g04036 658 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 244 365 - -
Vivi6g04036 658 Pfam Protein tyrosine and serine/threonine kinase 289 560 IPR001245 GO:0004672|GO:0006468
Vivi6g04036 658 Gene3D Phosphorylase Kinase; domain 1 246 365 - -
Vivi6g04036 658 MobiDBLite consensus disorder prediction 638 658 - -
Vivi6g04036 658 MobiDBLite consensus disorder prediction 615 658 - -
Vivi6g04036 658 ProSiteProfiles Protein kinase domain profile. 286 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04036 658 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Vivi6g04036 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Vivi6g04036 658 CDD STKc_IRAK 292 561 - -
Vivi6g04036 658 SMART serkin_6 286 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g04036 658 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 367 568 - -
Vivi6g04036 658 Gene3D Transferase(Phosphotransferase) domain 1 367 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04036 Vivi-Chr6 137805772 137808069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04036 13 606 Receptor kinase-like Gene Family AT2G48010 59.766 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vivi6g04036 PK_Tyr_Ser-Thr 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04036 - - gmx:100819453 887.486