Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04018 ATGGTTGGGGAAGGGATCATGCCATTTGATTGGGGATACAAGAGGTTTTTTAAGAGGACAGCTTTAGAGACATCAGACTACCTTAAAGATGACTGCCTCTCTGTAAATTGTAGTGTTGGTGTTGTGAGGTCACACACAGAAGGCCCAAAGATATATTCCATTGCAATACCACCTTCTAACATTGGTCACCAATTTGGTCAACTGCTGGAAACTGGTATAGGAAATGATGTGAGTTTTGAAGTGGATGGGGAAGTTTTTAATGCTCATAAATTGGTGCTAGCAGCGCGTTCTCCTGTTTTCAGAGCCCAGCTTTTTGGTCCTATGAAAGATCACAATACTCGGTGTATTAAAGTTGAAGACATGGAAGTTCCAGTTTTTAAGGCATTGCTTCATTTTATATACTGGGACTCACTGCCTGACATGCAAGAGCTTACTGGTATGAACACAAAATGGGCAACAACCTTGATGGCCCAACATCTTCTAGCAGCTGCTGATCGATATGCCTTAGAGAGGCTCAGGCTTATCTGTGAAGCGAGTCTATGTGAAGATGTTGCCATAAATACTGTGGCTACGACTTTAGCCTTGGCAGAGCAGCATCACTGTTTCCAGTTGAAAGCAGTCTGTCTCAAGTTTATTGCTACCTCCGAAAATCTCAGAGCTGTGATGCAAACTGATGGATTTGAGTACTTGAAGGAAAGTTGCCCGCCTGTTCTGACTGAGCTGTTGGAGTACGTGGCTAGATTTACCGAGCATTCGGACTTTATGTGCAAGCATAGGAATGAAGCAATACTCGATGGCAGTGACATAAATGGGAGGCGGGTGAAGCAAAGGCTTTAG 837 0.4373 MVGEGIMPFDWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSHTEGPKIYSIAIPPSNIGHQFGQLLETGIGNDVSFEVDGEVFNAHKLVLAARSPVFRAQLFGPMKDHNTRCIKVEDMEVPVFKALLHFIYWDSLPDMQELTGMNTKWATTLMAQHLLAAADRYALERLRLICEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSENLRAVMQTDGFEYLKESCPPVLTELLEYVARFTEHSDFMCKHRNEAILDGSDINGRRVKQRL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04018 278 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 3 49 IPR008974 GO:0005515
Vivi6g04018 278 CDD BACK_AtBPM-like 181 244 IPR034090 -
Vivi6g04018 278 ProSiteProfiles BTB domain profile. 75 134 IPR000210 GO:0005515
Vivi6g04018 278 ProSiteProfiles MATH/TRAF domain profile. 1 39 IPR002083 GO:0005515
Vivi6g04018 278 CDD MATH 8 39 IPR002083 GO:0005515
Vivi6g04018 278 CDD BTB_POZ_BPM_plant 61 181 - -
Vivi6g04018 278 SUPERFAMILY POZ domain 52 182 IPR011333 -
Vivi6g04018 278 Pfam BTB/POZ domain 66 182 IPR000210 GO:0005515
Vivi6g04018 278 FunFam BTB-POZ and math domain 1 184 261 - -
Vivi6g04018 278 SMART BTB_4 75 184 IPR000210 GO:0005515
Vivi6g04018 278 FunFam BTB-POZ and math domain 1 51 178 - -
Vivi6g04018 278 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 12 242 IPR045005 GO:0016567
Vivi6g04018 278 Gene3D - 184 261 - -
Vivi6g04018 278 Gene3D Potassium Channel Kv1.1; Chain A 51 178 IPR011333 -
Vivi6g04018 278 SUPERFAMILY TRAF domain-like 8 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04018 Vivi-Chr6 137327108 137329775 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi6g04018 BTB 1.2e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04018 K10523 - gmx:102668882 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04018 6 137327108 137329775 Vivi6g04018 6 137327108 137329775 ECH