Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04007 ATGTCCAGAATATGTGTGAAGAATCTCCCTAAATACGTTGCAGAGGATCAACTAAAAGAATTATTTTCTCAGAAAGGAGAAATAACCGATGTCAAGCTCATGCGTACCAAAAACGGTAAAACTCGACAATTTGCTTTTGTTGGATTTCGTACAGACCAGGAGGCTCATGAAGCGATTCGATATTTCAATAGATCTTACCTTGGCACACTCAGAATTACTTGTGAGGTGGCTCAACAACGCGGTGATGCAAATCTTCCTCGTTCGTGGAGTCGACATTCAGCAAAATTAGGCAATAAAGTGATCACTCCAGATCTGAACAATCATGTGAAAGTTAAAGGGCAAGGAGACTATTCTAAGGATATAGATGACCCAAAGCTTCAAGATTTTCTTCAGGTTATGCAACCTCGGGCCAAGTCTAAGATGTGGGCAAATGATACTTCAGTTGTATCTAATGATGGCAACAACCAAGTAACACTTAATAAGGAGACCAAGGGTAAATCAGTTGCAGACCATCCTATCTTAAGCGTCTCACAAGTGGATGGATTACCAAATAATCCTGAATCCGACAAGTCACACGAGCTTAAGCATGATAAAGTAATTTCTGATATGGATTATTTCAAGAGTAAAGTGACAACGGAGTGGTCTGATTCTGAAAGCAACGATGATGAAAACGACGACGACAGCAGTGATTTGGCATCTTCTGACGATGATGACAAAGATAACGACAAACATGTTAGTGAACGTGAAGTAAATTGTGGTAATAACCCTTCTGAAAGAACCCCAAAAATTGGCGCTCAACAGTTAGATTTAGAGGGCCAAGAAGATGCTGTTAGAGAGGATGTTGCCAATGTCAAGTCTCAAGTGAATGCAACTGAAGAAGGGGGGCAGTTATCCAATCCAGAAGATAATAATGGAGTTTCTGAATCATGCCGACTGTTTGTCCGTAATCTGCCATATACAACCAGCGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGTAATGTCTCACAGGTTCATTTAGTTGTTGATAAGGTGACAAAAAGATCCAAAGGAATAGCTTATATTCATTTTTCAGTTCCAGAGTTTGCAGCCAGAGCGTTAGAAGAGTCAGACAATTCAATCTTCCAGGGGAGATTATTGCATGTTATGCCAGCTATACCAAGACATTCAAACAATGAAGAGAACAAGGACCAAGACTCTAAACCTCTCAAACAACGAAGAGAGGAAGAGAGGAAAGCAGCTGAGGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGACACAGTTGTAGAAAACATTGCTCGGAAATATGGTGTTAGTAAAAGTGATTTTATGGATCGAGAAGCTGGTGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTAATTTCAGAAACAAAAAATGCATTTAAAAAAGCTGGAGTAAACGTGGAGTCTTTGGAAGAACTTACAAAGGGTAAAGTTGAAGGCGTGAAAAGAAGTAACCATGTACTTTTAGCAAAAAATTTGCCCTATGGTTCTACGGAAAGTGAACTTGTAAAGATGTTTGGGAATTTTGGTAGCTTGGATAAAATAATTCTCCCCCCGACCAAAACATTGGCCCTGGTTGTCTTCCTTGAACCAGCCGAAGCTAAAGCTGCTTTTAAAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCCGACATTCTTCTCCCAAAATCAACATCTGAAAATAATGAGGTGAATAGTGGAATAGGTGAAAAGGATGTCAAGCGTCTGATACTAGAGCAAGACGTGGAAAGAATATCAGATATGGATATTGATCCAGACAGAATAGAGGCTCGGTCTCTATTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGAGTTTGAAGCAACATTTCAGCGAACACATGAAAGAGGGGCGGATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTATGGATTTATTGAATTTGACTCCACAGAGACTGCCACGAGTGTTCGTAGCAATTTGCAGGGGACTGTTTTGGACAGTCATGCTCTTAATTTACAACCTTGTCATGTCAAGGATGTTGGTAAAGTACTTAAGAAAGTTGAGAAAGACAAGAGTTCGACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAATTGTTTAGCCCGTTTGGCCAGATTAAAAGCTTAAGATTGCCAATGAAGTTTGGAAATCATAGAGGCTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCGCAAAATGCTCTTACAGCACTCTCAAGCACTCACTTGTATGGAAGACATCTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGATGACCTGCGTGCTCGAACTGCTGCTCAATTTAATGAACCCAGTGGATTTCAAGATGCTTCATCCAAGAAAAGGAAGGCCTTTAGCATGCTAGATGAAGAAAATATGAAGTTTGGAAGGTTTGATTAG 2535 0.4063 MSRICVKNLPKYVAEDQLKELFSQKGEITDVKLMRTKNGKTRQFAFVGFRTDQEAHEAIRYFNRSYLGTLRITCEVAQQRGDANLPRSWSRHSAKLGNKVITPDLNNHVKVKGQGDYSKDIDDPKLQDFLQVMQPRAKSKMWANDTSVVSNDGNNQVTLNKETKGKSVADHPILSVSQVDGLPNNPESDKSHELKHDKVISDMDYFKSKVTTEWSDSESNDDENDDDSSDLASSDDDDKDNDKHVSEREVNCGNNPSERTPKIGAQQLDLEGQEDAVREDVANVKSQVNATEEGGQLSNPEDNNGVSESCRLFVRNLPYTTSEEELEEHFSQFGNVSQVHLVVDKVTKRSKGIAYIHFSVPEFAARALEESDNSIFQGRLLHVMPAIPRHSNNEENKDQDSKPLKQRREEERKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDFMDREAGDLAVRIALGETQVISETKNAFKKAGVNVESLEELTKGKVEGVKRSNHVLLAKNLPYGSTESELVKMFGNFGSLDKIILPPTKTLALVVFLEPAEAKAAFKGLAYKRYKDAPLYLEWAPSDILLPKSTSENNEVNSGIGEKDVKRLILEQDVERISDMDIDPDRIEARSLFVKNLNFKTTDESLKQHFSEHMKEGRILSVKVKKHLKNGKNVSMGYGFIEFDSTETATSVRSNLQGTVLDSHALNLQPCHVKDVGKVLKKVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLDDLRARTAAQFNEPSGFQDASSKKRKAFSMLDEENMKFGRFD 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04007 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 622 705 IPR000504 GO:0003723
Vivi6g04007 844 MobiDBLite consensus disorder prediction 217 235 - -
Vivi6g04007 844 PANTHER RNA BINDING PROTEIN 291 644 - -
Vivi6g04007 844 Gene3D - 2 92 IPR012677 -
Vivi6g04007 844 MobiDBLite consensus disorder prediction 163 197 - -
Vivi6g04007 844 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 603 714 - -
Vivi6g04007 844 SUPERFAMILY RNA-binding domain, RBD 302 393 IPR035979 GO:0003676
Vivi6g04007 844 CDD RRM6_RBM19_RRM5_MRD1 722 796 - -
Vivi6g04007 844 SUPERFAMILY RNA-binding domain, RBD 499 586 IPR035979 GO:0003676
Vivi6g04007 844 CDD RRM5_RBM19_like 623 701 IPR034423 -
Vivi6g04007 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Vivi6g04007 844 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Vivi6g04007 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Vivi6g04007 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 574 IPR000504 GO:0003723
Vivi6g04007 844 Gene3D - 495 596 IPR012677 -
Vivi6g04007 844 Gene3D - 713 818 IPR012677 -
Vivi6g04007 844 MobiDBLite consensus disorder prediction 391 418 - -
Vivi6g04007 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 624 698 IPR000504 GO:0003723
Vivi6g04007 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 566 IPR000504 GO:0003723
Vivi6g04007 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 70 IPR000504 GO:0003723
Vivi6g04007 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 382 IPR000504 GO:0003723
Vivi6g04007 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 724 791 IPR000504 GO:0003723
Vivi6g04007 844 Gene3D - 277 422 IPR012677 -
Vivi6g04007 844 CDD RRM3_RBM19_RRM2_MRD1 311 384 - -
Vivi6g04007 844 SUPERFAMILY RNA-binding domain, RBD 718 800 IPR035979 GO:0003676
Vivi6g04007 844 CDD RRM1_MRD1 2 77 - -
Vivi6g04007 844 MobiDBLite consensus disorder prediction 212 262 - -
Vivi6g04007 844 SUPERFAMILY RNA-binding domain, RBD 609 707 IPR035979 GO:0003676
Vivi6g04007 844 MobiDBLite consensus disorder prediction 386 418 - -
Vivi6g04007 844 FunFam Multiple RNA-binding domain-containing protein 1 493 595 - -
Vivi6g04007 844 FunFam Multiple RNA-binding domain-containing protein 1 716 821 - -
Vivi6g04007 844 SMART rrm1_1 623 701 IPR000504 GO:0003723
Vivi6g04007 844 SMART rrm1_1 3 75 IPR000504 GO:0003723
Vivi6g04007 844 SMART rrm1_1 311 384 IPR000504 GO:0003723
Vivi6g04007 844 SMART rrm1_1 723 794 IPR000504 GO:0003723
Vivi6g04007 844 SMART rrm1_1 503 570 IPR000504 GO:0003723
Vivi6g04007 844 Gene3D - 619 708 IPR012677 -
Vivi6g04007 844 SMART rrm2_1 311 384 IPR003954 GO:0003676
Vivi6g04007 844 SMART rrm2_1 3 75 IPR003954 GO:0003676
Vivi6g04007 844 CDD RRM4_RBM19_RRM3_MRD1 502 573 - -
Vivi6g04007 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 722 798 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04007 Vivi-Chr6 137181383 137191054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04007 2 82 Eukaryotic Initiation Factors Gene Family AT1G49760 38.272 5.16e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04007 K14787 - gmx:100798742 1151.35