Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04006 ATGATAGGAATGCACTTCCTCCTGCTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTTCTATCCATTATCAGATTGGACAAAAGAAGGGATTGGCCATGTCAAGATAAGATGCCAAGGAAGAGATTCTGTACCTGATGATGAGTCTGTACAAAAGTTTTGCAATGAGGTTCTGGATTTTTGCTCTCGAAGTTCAAACTCAAAGAAATATATACTTGTACACTGCACTCATGGGCATAATCGTACAGGCTATATGATTGTTCATTTTCTTGTGCGTACAGAATCACTATCTGTCACTGAGGCAATAAGTAAATTTGCACAGGCACGTCCCCCAGGAATTTACAAACAGGATTACATTGATACCTTGTACATGTTTTTTAATGAAAAGAAGCCTGAAAGTCTTGTTTGTCCACAAACTCCAGAATGGAAGAGCCTCCCTGACCCTGACGTTCATGGTGTGTCTGTCTCAGCTACAGACAATCATGCAGACATTTTGCAGCAGGAGAATATCGTGAGAAATGGAGTATTGACAAATGATGATATTTTGGGAGATCCCATTCCTTCCAACCAGCTACGTACAATGCAAGAACTTTGTTATCAACTGCTTAAGTTGGGCAAAGGGGGAAGAGGAGTTTTGTACTTTCCGGGATCACACCCTGTTTCTCTTAACAGGGAGAAGTTACAACTCTTAAGACAGCGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATCTGATTGACAGAAAATTTCATTTCCAAAGGATCTCTATGCGGTTTCCTTGCAAATACTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAAATGATTATTGACACGGATCCACATACTCATAAGCAAGAAAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTCTGACAGAGATGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCCCGTAATATGGAACGAGAAGCCCTTTCCAAGAGTTTAAATCCTTATTATAGATACGACTTGGAACCGTTTGGTGTGAGGAGGAAGGGTTTTTGGCTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACACTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACGCATGAAGGTCTTTTGAAGTGGAAATACCCTGAAATGAACTCTGTCGATTTCCACTTTGAGGTGGGAGCTGATGGTCGACCCCTGCTTTTTCTGTTTGAACGTGGAAAGAAGAAGTTAATGGAAGGGAATACTGTTATTTTTAAAGATTCGGAAGATATTTCATCCTATTCAGGGAGGATAATTGAGTGCTACTGGGATGCTGCAGAGCGTCACTGGGTCTGTATGCGGATCAGGACTGATAAAGCAACTCCAAATGAGATCAATACTTATAGAAAGGTAATGCGAAGCATAAAGGATAATATCACAGAAGAAGTAGTGTTGAAGGAGATTAATGAGATCATTCGACTACCCTTGTATGCAGACAGAATACAAAGAGATATCAAGGCTCACCAGCATATGGTCTCTTCGCGGCGCAAGTGA 1647 0.4111 MIGMHFLLLGLVIDLTNTTRFYPLSDWTKEGIGHVKIRCQGRDSVPDDESVQKFCNEVLDFCSRSSNSKKYILVHCTHGHNRTGYMIVHFLVRTESLSVTEAISKFAQARPPGIYKQDYIDTLYMFFNEKKPESLVCPQTPEWKSLPDPDVHGVSVSATDNHADILQQENIVRNGVLTNDDILGDPIPSNQLRTMQELCYQLLKLGKGGRGVLYFPGSHPVSLNREKLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFHFQRISMRFPCKYSNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTEMPFYERWKLLEKEVIEPRNMEREALSKSLNPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGADGRPLLFLFERGKKKLMEGNTVIFKDSEDISSYSGRIIECYWDAAERHWVCMRIRTDKATPNEINTYRKVMRSIKDNITEEVVLKEINEIIRLPLYADRIQRDIKAHQHMVSSRRK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04006 548 PIRSF mRNA_capping_HCE 4 548 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vivi6g04006 548 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 52 121 IPR000387 GO:0016311|GO:0016791
Vivi6g04006 548 Gene3D - 418 510 IPR012340 -
Vivi6g04006 548 Pfam Dual specificity phosphatase, catalytic domain 10 127 IPR000340 GO:0008138|GO:0016311
Vivi6g04006 548 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 8 143 IPR029021 -
Vivi6g04006 548 Pfam mRNA capping enzyme, C-terminal domain 422 515 IPR013846 -
Vivi6g04006 548 Gene3D DNA ligase/mRNA capping enzyme 178 417 - -
Vivi6g04006 548 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 195 418 - -
Vivi6g04006 548 SUPERFAMILY Nucleic acid-binding proteins 420 533 IPR012340 -
Vivi6g04006 548 Pfam mRNA capping enzyme, catalytic domain 219 417 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04006 548 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 133 IPR020422 GO:0006470|GO:0008138
Vivi6g04006 548 ProSitePatterns Tyrosine specific protein phosphatases active site. 74 84 IPR016130 GO:0016311|GO:0016791
Vivi6g04006 548 SMART dsp_5 10 129 IPR020422 GO:0006470|GO:0008138
Vivi6g04006 548 CDD Adenylation_mRNA_capping 190 418 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04006 548 Gene3D Protein tyrosine phosphatase superfamily 6 153 IPR029021 -
Vivi6g04006 548 FunFam mRNA capping enzyme family protein 416 525 - -
Vivi6g04006 548 PANTHER MRNA-CAPPING ENZYME 9 529 - -
Vivi6g04006 548 FunFam mRNA capping enzyme, putative 178 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04006 Vivi-Chr6 137168310 137177419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04006 9 538 Protein tyrosine phosphatase (PTP) family AT3G09100 63.128 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04006 - K13917 gmx:100793183 970.689