Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04005 ATGAGCTATCAAATGAATGGTGAAGATGCACGTAGAGATTTAAAAAGAAAGCTCCCTCAGATGGATCGAGGGCAAGAGCGGAGATCTTATAATATGAATTCTGCACCGTATGATAGGAATGCACTTCCTCCTGGTTGGTTAGACTGCCCAGCACACGGGCAGGAACTAGGTTGCATAATCCCTTCAAAGGTTCCACTTGGCGAATCCTTCAATGATTACATTCCAAATAAAAAATATACCCCCAAGCAAGCAATTCTTCAACAGAGAGCTTTAGATTGGACAAAAGAAGGGATTGGCCATGTCAAGATAAGATGCCAAGGAAGAGATTCTGTACCTGATGATGAGTCTGTACAAAAGTTTTGCAATGAGGTTCTGGATTTTTGCTCTCGAAGTTCAAACTCAAAGAAATATATACTTGTACACTGCACTCATGGGCATAATCGTACAGGCTATATGATTGTTCATTTTCTTGTGCGTACAGAATCACTATCTGTCACTGAGGCAATAAGTAAATTTGCACAGGCACGTCCCCCAGGAATTTACAAACAGGATTACATTGATACCTTGTACATGTTTTTTAATGAAAAGAAGCCTGAAAGTCTTGTTTGTCCACAAACTCCAGAATGGAAGAGCCTCCCTGACCCTGACGTTCATGGTGTGTCTGTCTCAGCTACAGACAATCATGCAGACATTTTGCAGCAGGAGAATATCGTGAGAAATGGAGTATTGACAAATGATGATATTTTGGGAGATCCCATTCCTTCCAACCAGCTACGTACAATGCAAGAACTTTGTTATCAACTGCTTAAGTTGGGCAAAGGGGGAAGAGGAGTTTTGTACTTTCCGGGATCACACCCTGTTTCTCTTAACAGGGAGAAGTTACAACTCTTAAGACAGCGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATCTGATTGACAGAAAATTTCATTTCCAAAGGATCTCTATGCGGTTTCCTTGCAAATACTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAAATGATTATTGACACGGATCCACATACTCATAAGCAAGAAAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTCTGACAGAGATGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCCCGTAATATGGAACGAGAAGCCCTTTCCAAGAGTTTAAATCCTTATTATAGATACGACTTGGAACCGTTTGGTGTGAGGAGGAAGGGTTTTTGGCTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACACTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACGCATGAAGGTCTTTTGAAGTGGAAATACCCTGAAATGAACTCTGTCGATTTCCACTTTGAGGTGGGAGCTGATGGTCGACCCCTGCTTTTTCTGTTTGAACGTGGAAAGAAGAAGTTAATGGAAGGGAATACTGTTATTTTTAAAGATTCGGAAGATATTTCATCCTATTCAGGGAGGATAATTGAGTGCTACTGGGATGCTGCAGAGCGTCACTGGGTCTGTATGCGGATCAGGACTGATAAAGCAACTCCAAATGAGATCAATACTTATAGAAAGGTAATGCGAAGCATAAAGGATAATATCACAGAAGAAGTAGTGTTGAAGGAGATTAATGAGATCATTCGACTACCCTTGTATGCAGACAGAATACAAAGAGATATCAAGGCTCACCAGCATATGGTCTCTTCGCGGCGCAAGTGA 1845 0.4146 MSYQMNGEDARRDLKRKLPQMDRGQERRSYNMNSAPYDRNALPPGWLDCPAHGQELGCIIPSKVPLGESFNDYIPNKKYTPKQAILQQRALDWTKEGIGHVKIRCQGRDSVPDDESVQKFCNEVLDFCSRSSNSKKYILVHCTHGHNRTGYMIVHFLVRTESLSVTEAISKFAQARPPGIYKQDYIDTLYMFFNEKKPESLVCPQTPEWKSLPDPDVHGVSVSATDNHADILQQENIVRNGVLTNDDILGDPIPSNQLRTMQELCYQLLKLGKGGRGVLYFPGSHPVSLNREKLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFHFQRISMRFPCKYSNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTEMPFYERWKLLEKEVIEPRNMEREALSKSLNPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGADGRPLLFLFERGKKKLMEGNTVIFKDSEDISSYSGRIIECYWDAAERHWVCMRIRTDKATPNEINTYRKVMRSIKDNITEEVVLKEINEIIRLPLYADRIQRDIKAHQHMVSSRRK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04005 614 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 261 484 - -
Vivi6g04005 614 CDD Adenylation_mRNA_capping 256 484 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04005 614 PANTHER MRNA-CAPPING ENZYME 37 595 - -
Vivi6g04005 614 Pfam mRNA capping enzyme, C-terminal domain 488 581 IPR013846 -
Vivi6g04005 614 Gene3D Protein tyrosine phosphatase superfamily 17 215 IPR029021 -
Vivi6g04005 614 SUPERFAMILY Nucleic acid-binding proteins 486 599 IPR012340 -
Vivi6g04005 614 Gene3D - 484 576 IPR012340 -
Vivi6g04005 614 FunFam mRNA capping enzyme, putative 244 481 - -
Vivi6g04005 614 PIRSF mRNA_capping_HCE 28 614 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vivi6g04005 614 Gene3D DNA ligase/mRNA capping enzyme 244 483 - -
Vivi6g04005 614 Pfam mRNA capping enzyme, catalytic domain 285 483 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04005 614 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 118 187 IPR000387 GO:0016311|GO:0016791
Vivi6g04005 614 Pfam Dual specificity phosphatase, catalytic domain 101 193 IPR000340 GO:0008138|GO:0016311
Vivi6g04005 614 SMART dsp_5 45 195 IPR020422 GO:0006470|GO:0008138
Vivi6g04005 614 MobiDBLite consensus disorder prediction 1 36 - -
Vivi6g04005 614 ProSitePatterns Tyrosine specific protein phosphatases active site. 140 150 IPR016130 GO:0016311|GO:0016791
Vivi6g04005 614 FunFam mRNA capping enzyme family protein 482 591 - -
Vivi6g04005 614 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 209 IPR029021 -
Vivi6g04005 614 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04005 Vivi-Chr6 137167569 137177419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04005 31 604 Protein tyrosine phosphatase (PTP) family AT3G09100 59.302 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04005 - K13917 gmx:100793183 1073.54