Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04004 ATGAGCTATCAAATGAATGGTGAAGATGCACGTAGAGATTTAAAAAGAAAGCTCCCTCAGATGGATCGAGGGCAAGAGCGGAGATCTTATAATATGAATTCTGCACCGTATGATAGGAATGCACTTCCTCCTGGTTGGTTAGACTGCCCAGCACACGGGCAGGAACTAGGTTGCATAATCCCTTCAAAGGTTCCACTTGGCGAATCCTTCAATGATTACATTCCAAATAAAAAATATACCCCCAAGCAAGCAATTCTTCAACAGAGAGCTTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTTCTATCCATTATCAGATTGGACAAAAGAAGGGATTGGCCATGTCAAGATAAGATGCCAAGGAAGAGATTCTGTACCTGATGATGAGTCTGTACAAAAGTTTTGCAATGAGGTTCTGGATTTTTGCTCTCGAAGTTCAAACTCAAAGAAATATATACTTGTACACTGCACTCATGGGCATAATCGTACAGGCTATATGATTGTTCATTTTCTTGTGCGTACAGAATCACTATCTGTCACTGAGGCAATAAGTAAATTTGCACAGGCACGTCCCCCAGGAATTTACAAACAGGATTACATTGATACCTTGTACATGTTTTTTAATGAAAAGAAGCCTGAAAGTCTTGTTTGTCCACAAACTCCAGAATGGAAGAGCCTCCCTGACCCTGACGTTCATGGTGTGTCTGTCTCAGCTACAGACAATCATGCAGACATTTTGCAGCAGGAGAATATCGTGAGAAATGGAGTATTGACAAATGATGATATTTTGGGAGATCCCATTCCTTCCAACCAGCTACGTACAATGCAAGAACTTTGTTATCAACTGCTTAAGTTGGGCAAAGGGGGAAGAGGAGTTTTGTACTTTCCGGGATCACACCCTGTTTCTCTTAACAGGGAGAAGTTACAACTCTTAAGACAGCGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATCTGATTGACAGAAAATTTCATTTCCAAAGGATCTCTATGCGGTTTCCTTGCAAATACTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAAATGATTATTGACACGGATCCACATACTCATAAGCAAGAAAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTCTGACAGAGATGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCCCGTAATATGGAACGAGAAGCCCTTTCCAAGAGTTTAAATCCTTATTATAGATACGACTTGGAACCGTTTGGTGTGAGGAGGAAGGGTTTTTGGCTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACACTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACGCATGAAGGTCTTTTGAAGTGGAAATACCCTGAAATGAACTCTGTCGATTTCCACTTTGAGGTGGGAGCTGATGGTCGACCCCTGCTTTTTCTGTTTGAACGTGGAAAGAAGAAGTTAATGGAAGGGAATACTGTTATTTTTAAAGATTCGGAAGATATTTCATCCTATTCAGGGAGGATAATTGAGTGCTACTGGGATGCTGCAGAGCGTCACTGGGTCTGTATGCGGATCAGGACTGATAAAGCAACTCCAAATGAGATCAATACTTATAGAAAGGTAATGCGAAGCATAAAGGATAATATCACAGAAGAAGTAGTGTTGAAGGAGATTAATGAGATCATTCGACTACCCTTGTATGCAGACAGAATACAAAGAGATATCAAGGCTCACCAGCATATGGTCTCTTCGCGGCGCAAGTGA 1905 0.4126 MSYQMNGEDARRDLKRKLPQMDRGQERRSYNMNSAPYDRNALPPGWLDCPAHGQELGCIIPSKVPLGESFNDYIPNKKYTPKQAILQQRALGRELGLVIDLTNTTRFYPLSDWTKEGIGHVKIRCQGRDSVPDDESVQKFCNEVLDFCSRSSNSKKYILVHCTHGHNRTGYMIVHFLVRTESLSVTEAISKFAQARPPGIYKQDYIDTLYMFFNEKKPESLVCPQTPEWKSLPDPDVHGVSVSATDNHADILQQENIVRNGVLTNDDILGDPIPSNQLRTMQELCYQLLKLGKGGRGVLYFPGSHPVSLNREKLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFHFQRISMRFPCKYSNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTEMPFYERWKLLEKEVIEPRNMEREALSKSLNPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGADGRPLLFLFERGKKKLMEGNTVIFKDSEDISSYSGRIIECYWDAAERHWVCMRIRTDKATPNEINTYRKVMRSIKDNITEEVVLKEINEIIRLPLYADRIQRDIKAHQHMVSSRRK 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04004 634 FunFam mRNA capping enzyme family protein 502 611 - -
Vivi6g04004 634 SUPERFAMILY Nucleic acid-binding proteins 506 619 IPR012340 -
Vivi6g04004 634 PANTHER MRNA-CAPPING ENZYME 37 615 - -
Vivi6g04004 634 SMART dsp_5 75 215 IPR020422 GO:0006470|GO:0008138
Vivi6g04004 634 Pfam mRNA capping enzyme, C-terminal domain 508 601 IPR013846 -
Vivi6g04004 634 FunFam mRNA capping enzyme, putative 264 501 - -
Vivi6g04004 634 FunFam mRNA capping enzyme family protein 38 251 - -
Vivi6g04004 634 PIRSF mRNA_capping_HCE 28 634 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vivi6g04004 634 Gene3D - 504 596 IPR012340 -
Vivi6g04004 634 Pfam Dual specificity phosphatase, catalytic domain 94 213 IPR000340 GO:0008138|GO:0016311
Vivi6g04004 634 CDD Adenylation_mRNA_capping 276 504 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04004 634 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 229 IPR029021 -
Vivi6g04004 634 CDD RNA_5'-triphosphatase 45 211 - -
Vivi6g04004 634 ProSitePatterns Tyrosine specific protein phosphatases active site. 160 170 IPR016130 GO:0016311|GO:0016791
Vivi6g04004 634 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 207 IPR000387 GO:0016311|GO:0016791
Vivi6g04004 634 Gene3D Protein tyrosine phosphatase superfamily 17 235 IPR029021 -
Vivi6g04004 634 Gene3D DNA ligase/mRNA capping enzyme 264 503 - -
Vivi6g04004 634 MobiDBLite consensus disorder prediction 1 36 - -
Vivi6g04004 634 Pfam mRNA capping enzyme, catalytic domain 305 503 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04004 634 MobiDBLite consensus disorder prediction 8 24 - -
Vivi6g04004 634 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 281 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04004 Vivi-Chr6 137167569 137177419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04004 31 624 Protein tyrosine phosphatase (PTP) family AT3G09100 61.794 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04004 - K13917 gmx:100793183 1122.46