Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04002 ATGAGCTATCAAATGAATGGTGAAGATGCACGTAGAGATTTAAAAAGAAAGCTCCCTCAGATGGATCGAGGGCAAGAGCGGAGATCTTATAATATGAATTCTGCACCGTATGATAGGAATGCACTTCCTCCTGGTTGGTTAGACTGCCCAGCACACGGGCAGGAACTAGGTTGCATAATCCCTTCAAAGGTTCCACTTGGCGAATCCTTCAATGATTACATTCCAAATAAAAAATATACCCCCAAGCAAGCAATTCTTCAACAGAGAGCTTTAGAGCACCACTTGATTTCCAATTTAGGATTTGAGTATAAAGACATAAAAAGCGTGAAGGATACGATACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTTCTATCCATTATCAGATTGGACAAAAGAAGGGATTGGCCATGTCAAGATAAGATGCCAAGGAAGAGATTCTGTACCTGATGATGAGTCTGTACAAAAGTTTTGCAATGAGGTTCTGGATTTTTGCTCTCGAAGTTCAAACTCAAAGAAATATATACTTGTACACTGCACTCATGGGCATAATCGTACAGGCTATATGATTGTTCATTTTCTTGTGCGTACAGAATCACTATCTGTCACTGAGGCAATAAGTAAATTTGCACAGGCACGTCCCCCAGGAATTTACAAACAGGATTACATTGATACCTTGTACATGTTTTTTAATGAAAAGAAGCCTGAAAGTCTTGTTTGTCCACAAACTCCAGAATGGAAGAGCCTCCCTGACCCTGACGTTCATGGTGTGTCTGTCTCAGCTACAGACAATCATGCAGACATTTTGCAGCAGGAGAATATCGTGAGAAATGGAGTATTGACAAATGATGATATTTTGGGAGATCCCATTCCTTCCAACCAGCTACGTACAATGCAAGAACTTTGTTATCAACTGCTTAAGTTGGGCAAAGGGGGAAGAGGAGTTTTGTACTTTCCGGGATCACACCCTGTTTCTCTTAACAGGGAGAAGTTACAACTCTTAAGACAGCGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATCTGATTGACAGAAAATTTCATTTCCAAAGGATCTCTATGCGGTTTCCTTGCAAATACTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAAATGATTATTGACACGGATCCACATACTCATAAGCAAGAAAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTCTGACAGAGATGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCCCGTAATATGGAACGAGAAGCCCTTTCCAAGAGTTTAAATCCTTATTATAGATACGACTTGGAACCGTTTGGTGTGAGGAGGAAGGGTTTTTGGCTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACACTCATCAGATGGTCTTGTATTCCAGATGCTGTCTGCTTTATCAACCTGTCTGTTATTTATGTCGGATTTTATCAGGGTTGGGATGATCCATATGTCCCTCGCACGCATGAAGGTCTTTTGA 1608 0.4067 MSYQMNGEDARRDLKRKLPQMDRGQERRSYNMNSAPYDRNALPPGWLDCPAHGQELGCIIPSKVPLGESFNDYIPNKKYTPKQAILQQRALEHHLISNLGFEYKDIKSVKDTILGLVIDLTNTTRFYPLSDWTKEGIGHVKIRCQGRDSVPDDESVQKFCNEVLDFCSRSSNSKKYILVHCTHGHNRTGYMIVHFLVRTESLSVTEAISKFAQARPPGIYKQDYIDTLYMFFNEKKPESLVCPQTPEWKSLPDPDVHGVSVSATDNHADILQQENIVRNGVLTNDDILGDPIPSNQLRTMQELCYQLLKLGKGGRGVLYFPGSHPVSLNREKLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFHFQRISMRFPCKYSNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTEMPFYERWKLLEKEVIEPRNMEREALSKSLNPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQMLSALSTCLLFMSDFIRVGMIHMSLARMKVF 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04002 535 SMART dsp_5 86 234 IPR020422 GO:0006470|GO:0008138
Vivi6g04002 535 Gene3D DNA ligase/mRNA capping enzyme 283 510 - -
Vivi6g04002 535 PIRSF mRNA_capping_HCE 28 509 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vivi6g04002 535 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 300 507 - -
Vivi6g04002 535 FunFam mRNA capping enzyme, putative 283 508 - -
Vivi6g04002 535 CDD Adenylation_mRNA_capping 295 504 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04002 535 ProSiteProfiles Dual specificity protein phosphatase domain profile. 74 238 IPR020422 GO:0006470|GO:0008138
Vivi6g04002 535 PANTHER MRNA-CAPPING ENZYME 37 505 - -
Vivi6g04002 535 CDD RNA_5'-triphosphatase 45 230 - -
Vivi6g04002 535 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 248 IPR029021 -
Vivi6g04002 535 MobiDBLite consensus disorder prediction 1 36 - -
Vivi6g04002 535 ProSitePatterns Tyrosine specific protein phosphatases active site. 179 189 IPR016130 GO:0016311|GO:0016791
Vivi6g04002 535 Pfam Dual specificity phosphatase, catalytic domain 113 232 IPR000340 GO:0008138|GO:0016311
Vivi6g04002 535 MobiDBLite consensus disorder prediction 8 24 - -
Vivi6g04002 535 Pfam mRNA capping enzyme, catalytic domain 324 505 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04002 535 Gene3D Protein tyrosine phosphatase superfamily 17 254 IPR029021 -
Vivi6g04002 535 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 157 226 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04002 Vivi-Chr6 137167567 137176581 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04002 31 504 Protein tyrosine phosphatase (PTP) family AT3G09100 55.809 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04002 - K13917 gmx:100793183 836.639