Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04001 ATGAGCTATCAAATGAATGGTGAAGATGCACGTAGAGATTTAAAAAGAAAGCTCCCTCAGATGGATCGAGGGCAAGAGCGGAGATCTTATAATATGAATTCTGCACCGTATGATAGGAATGCACTTCCTCCTGGTTGGTTAGACTGCCCAGCACACGGGCAGGAACTAGGTTGCATAATCCCTTCAAAGGTTCCACTTGGCGAATCCTTCAATGATTACATTCCAAATAAAAAATATACCCCCAAGCAAGCAATTCTTCAACAGAGAGCTTTAGAGCACCACTTGATTTCCAATTTAGGATTTGAGTATAAAGACATAAAAAGCGTGAAGGATACGATACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTTCTATCCATTATCAGATTGGACAAAAGAAGGGATTGGCCATGTCAAGATAAGATGCCAAGGAAGAGATTCTGTACCTGATGATGAGTCTGTACAAAAGTTTTGCAATGAGGTTCTGGATTTTTGCTCTCGAAGTTCAAACTCAAAGAAATATATACTTGTACACTGCACTCATGGGCATAATCGTACAGGCTATATGATTGTTCATTTTCTTGTGCGTACAGAATCACTATCTGTCACTGAGGCAATAAGTAAATTTGCACAGGCACGTCCCCCAGGAATTTACAAACAGGATTACATTGATACCTTGTACATGTTTTTTAATGAAAAGAAGCCTGAAAGTCTTGTTTGTCCACAAACTCCAGAATGGAAGAGCCTCCCTGACCCTGACGTTCATGGTGTGTCTGTCTCAGCTACAGACAATCATGCAGACATTTTGCAGCAGGGAAGAGGAGTTTTGTACTTTCCGGGATCACACCCTGTTTCTCTTAACAGGGAGAAGTTACAACTCTTAAGACAGCGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATCTGATTGACAGAAAATTTCATTTCCAAAGGATCTCTATGCGGTTTCCTTGCAAATACTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAAATGATTATTGACACGGATCCACATACTCATAAGCAAGAAAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTCTGACAGAGATGCCGTTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCCCGTAATATGGAACGAGAAGCCCTTTCCAAGAGTTTAAATCCTTATTATAGATACGACTTGGAACCGTTTGGTGTGAGGAGGAAGGGTTTTTGGCTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACACTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACGCATGAAGGTCTTTTGAAGTGGAAATACCCTGAAATGAACTCTGTCGATTTCCACTTTGAGGTGGGAGCTGATGGTCGACCCCTGCTTTTTCTGTTTGAACGTGGAAAGAAGAAGTTAATGGAAGGGAATACTGTTATTTTTAAAGATTCGGAAGATATTTCATCCTATTCAGGGAGGATAATTGAGTGCTACTGGGATGCTGCAGAGCGTCACTGGGTCTGTATGCGGATCAGGACTGATAAAGCAACTCCAAATGAGATCAATACTTATAGAAAGGTAATGCGAAGCATAAAGGATAATATCACAGAAGAAGTAGTGTTGAAGGAGATTAATGAGATCATTCGACTACCCTTGTATGCAGACAGAATACAAAGAGATATCAAGGCTCACCAGCATATGGTCTCTTCGCGGCGCAAGTGA 1842 0.411 MSYQMNGEDARRDLKRKLPQMDRGQERRSYNMNSAPYDRNALPPGWLDCPAHGQELGCIIPSKVPLGESFNDYIPNKKYTPKQAILQQRALEHHLISNLGFEYKDIKSVKDTILGLVIDLTNTTRFYPLSDWTKEGIGHVKIRCQGRDSVPDDESVQKFCNEVLDFCSRSSNSKKYILVHCTHGHNRTGYMIVHFLVRTESLSVTEAISKFAQARPPGIYKQDYIDTLYMFFNEKKPESLVCPQTPEWKSLPDPDVHGVSVSATDNHADILQQGRGVLYFPGSHPVSLNREKLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFHFQRISMRFPCKYSNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTEMPFYERWKLLEKEVIEPRNMEREALSKSLNPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGADGRPLLFLFERGKKKLMEGNTVIFKDSEDISSYSGRIIECYWDAAERHWVCMRIRTDKATPNEINTYRKVMRSIKDNITEEVVLKEINEIIRLPLYADRIQRDIKAHQHMVSSRRK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04001 613 CDD Adenylation_mRNA_capping 280 483 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04001 613 PANTHER MRNA-CAPPING ENZYME 37 594 - -
Vivi6g04001 613 SMART dsp_5 86 234 IPR020422 GO:0006470|GO:0008138
Vivi6g04001 613 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 276 483 - -
Vivi6g04001 613 SUPERFAMILY Nucleic acid-binding proteins 485 598 IPR012340 -
Vivi6g04001 613 Gene3D - 483 575 IPR012340 -
Vivi6g04001 613 Pfam mRNA capping enzyme, C-terminal domain 487 580 IPR013846 -
Vivi6g04001 613 Pfam Dual specificity phosphatase, catalytic domain 113 232 IPR000340 GO:0008138|GO:0016311
Vivi6g04001 613 Gene3D DNA ligase/mRNA capping enzyme 260 482 - -
Vivi6g04001 613 ProSiteProfiles Dual specificity protein phosphatase domain profile. 74 238 IPR020422 GO:0006470|GO:0008138
Vivi6g04001 613 FunFam mRNA capping enzyme family protein 481 590 - -
Vivi6g04001 613 Gene3D Protein tyrosine phosphatase superfamily 17 254 IPR029021 -
Vivi6g04001 613 CDD RNA_5'-triphosphatase 45 230 - -
Vivi6g04001 613 Pfam mRNA capping enzyme, catalytic domain 284 482 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vivi6g04001 613 PIRSF mRNA_capping_HCE 251 613 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vivi6g04001 613 PIRSF mRNA_capping_HCE 28 276 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vivi6g04001 613 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 248 IPR029021 -
Vivi6g04001 613 FunFam mRNA capping enzyme, putative 262 480 - -
Vivi6g04001 613 MobiDBLite consensus disorder prediction 1 36 - -
Vivi6g04001 613 ProSitePatterns Tyrosine specific protein phosphatases active site. 179 189 IPR016130 GO:0016311|GO:0016791
Vivi6g04001 613 MobiDBLite consensus disorder prediction 8 24 - -
Vivi6g04001 613 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 157 226 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04001 Vivi-Chr6 137167566 137177471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04001 31 603 Protein tyrosine phosphatase (PTP) family AT3G09100 57.649 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04001 - K13917 gmx:100793183 1023.85