Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03988 ATGGATGGCAAGTTAACTTTGAAGAGGAAATTTGATTTCACTGAAGACGATGAATCAACCGTCGACGTTCTTCACGAAAGCTCTAGCCGTCTCTGTCTCGCCGACGATATTACTAAACGCGTCGGTCGGTTAAACTCGGTTTCTTTGTCGTCCGATCGAGATATCGGTGCTGCTCAAAATGATCTCTGTTTTCTTTCCGGATACGCTAAAGATGAGGACATTGTGGATCTTATGGTAGTTTGTGGCGTTGTTCCCACTATGGTGAAGCTTTTGCATTTGGTGTCTAATAGAGGTGAATTAGATTCTAATACTTACGATGTGGAAAAAGATTGTGTCTCTATCCTTGGTCATCTTGCTGTCAAGCCGGAGAATCAGCAACTCATTGTTGATGCGGGAGCTTTGCCTTGTCTTGTGGAATTGTTGATGAGACCTAAAGCACCTGGTGTTTCTCAAGCACTTTTTTCTCGTCTTCTTGGGAGAGTAGCTGATGCAATAACCAATCTTGCCCATGAAAATATCAACATCAAGACCCTTGTCAGGTTGGAAGGTGGCATCCCTCCTCTTGTTGATTTGCTTGAATCCAATGATAAAAAGGTACAGAGAGCTGCTGCAGGGGCTTTAAGAACTCTTGCATTTCAAAATGCTGAGAATAAAGACCAGATTGTTGAATGCGATGCATTGCCCACTCTTGTACTAATGCTTGGATCAGAGGATCCTGCAATACATTATGAGGCGGTTGGTGTGATTGGAAATCTTGTCCATTCTTCGCCTGAAATTAAGAAAGAAGTTCTTCTAGCCGAGGCTTTACAACCAGTTATTTGCCTGCTAAGTTCCCCCTGTTTGGAGACCCAAAGAGAAGCAGCTCTTTTAATCGGTCAATTTGCCACAACAGATTCAGATTGCAAGATTCACATTGCCCAAAGAGGTGCTATAAACCCTTTAATCAAAATGCTTAAGTCTCCAGATTTACAACTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACTCACACAATCAAGCTGGCATTGCTTACAATGGAGGTATAGAGCCCCTCCTTAATCTTCTTGCTACTAAGAACGCTTCTGTCCAACACAATGCAGCTTTTGCTCTTTATGCTCTTGCTGATAATGAGGACAATGTTCCTCTTATTATTAAAGCTGATGGTTTACAAAAACTGCAGGATGGACATTTCAGTGTTCTACCTACTCGAGAGTGTGTAGCAAAGATGTTAAAAAGATTGGAAGAGAAGATGGAAGGGCGAGTACTGAAGCAAATGTTGCATCTTATGCGATCTGGGGAAAAGGTTGTTCAAAAACGTGTAGCTCTTGCTCTAGCACATTTATGTTCTGCCGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGAACATCTTGAATCTTCAAACAAAAAGCAGAAGCGTGAAGCCTCTGCAGCGCTTCACGCAATGGCTACCAAAGGAATAGGTGCCTCTATTGTTGATCTTGCGCCTACATCACCAACTTCCCAGGTTTACTTGGGTGAGCAATATGTAAACAATCCACTACTTTCTGATGTCACATTCTTAGTTGAAGGCAAAATCTTTTATGCTCATAAAGTTTGTTTAGTTTCATCTATTATATTTCGTGCAATGTTTGATGGGGGTTACAGGGAAAAGGAAGCCAAGGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACTGGAACAGTAGAAGTTGATTTGGAAGTTGCCCCGGACCTCCTTAAAGCTGCAGATCAATATCTGCTCGACGGTCTTAAGCGTATTTGTGAATCTGTTATTTCTAAGGATATTTCTGTGGAAAATGTTTCTCTAATGTATGTGATGTCAGACACATATAATGCTACATCGTTAAAATATTCATGCATACTCTTTATCTTGGAGCAATTTGATAACTTGAGCTCCAAACCATGGTATTGTCGCTTTATGCGTTGCATTAAGCCGGACATTTGGAACTTCTTCTGGACCTTACTTATCACGCCTAAACAAGCTGACTAG 2070 0.4087 MDGKLTLKRKFDFTEDDESTVDVLHESSSRLCLADDITKRVGRLNSVSLSSDRDIGAAQNDLCFLSGYAKDEDIVDLMVVCGVVPTMVKLLHLVSNRGELDSNTYDVEKDCVSILGHLAVKPENQQLIVDAGALPCLVELLMRPKAPGVSQALFSRLLGRVADAITNLAHENINIKTLVRLEGGIPPLVDLLESNDKKVQRAAAGALRTLAFQNAENKDQIVECDALPTLVLMLGSEDPAIHYEAVGVIGNLVHSSPEIKKEVLLAEALQPVICLLSSPCLETQREAALLIGQFATTDSDCKIHIAQRGAINPLIKMLKSPDLQLREMSTFALGRLAQDSHNQAGIAYNGGIEPLLNLLATKNASVQHNAAFALYALADNEDNVPLIIKADGLQKLQDGHFSVLPTRECVAKMLKRLEEKMEGRVLKQMLHLMRSGEKVVQKRVALALAHLCSADDRKTIFIDNNGLELLLEHLESSNKKQKREASAALHAMATKGIGASIVDLAPTSPTSQVYLGEQYVNNPLLSDVTFLVEGKIFYAHKVCLVSSIIFRAMFDGGYREKEAKDIEIPNIKWNVFELMMRFIYTGTVEVDLEVAPDLLKAADQYLLDGLKRICESVISKDISVENVSLMYVMSDTYNATSLKYSCILFILEQFDNLSSKPWYCRFMRCIKPDIWNFFWTLLITPKQAD 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03988 689 Gene3D - 47 231 IPR011989 -
Vivi6g03988 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 132 183 IPR000225 GO:0005515
Vivi6g03988 689 Gene3D - 420 505 IPR011989 -
Vivi6g03988 689 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 685 IPR044282 -
Vivi6g03988 689 SMART BTB_4 526 622 IPR000210 GO:0005515
Vivi6g03988 689 Pfam BTB/POZ domain 519 620 IPR000210 GO:0005515
Vivi6g03988 689 SUPERFAMILY POZ domain 517 620 IPR011333 -
Vivi6g03988 689 SUPERFAMILY ARM repeat 164 493 IPR016024 -
Vivi6g03988 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 82 133 IPR000225 GO:0005515
Vivi6g03988 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 350 392 IPR000225 GO:0005515
Vivi6g03988 689 ProSiteProfiles BTB domain profile. 526 592 IPR000210 GO:0005515
Vivi6g03988 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 218 IPR000225 GO:0005515
Vivi6g03988 689 Coils Coil 464 484 - -
Vivi6g03988 689 Pfam Armadillo/beta-catenin-like repeat 182 211 IPR000225 GO:0005515
Vivi6g03988 689 Pfam Armadillo/beta-catenin-like repeat 214 253 IPR000225 GO:0005515
Vivi6g03988 689 Gene3D - 232 419 IPR011989 -
Vivi6g03988 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 351 IPR000225 GO:0005515
Vivi6g03988 689 SMART arm_5 298 338 IPR000225 GO:0005515
Vivi6g03988 689 SMART arm_5 214 254 IPR000225 GO:0005515
Vivi6g03988 689 SMART arm_5 339 379 IPR000225 GO:0005515
Vivi6g03988 689 SMART arm_5 454 494 IPR000225 GO:0005515
Vivi6g03988 689 SMART arm_5 171 212 IPR000225 GO:0005515
Vivi6g03988 689 SMART arm_5 256 296 IPR000225 GO:0005515
Vivi6g03988 689 SMART arm_5 121 170 IPR000225 GO:0005515
Vivi6g03988 689 SMART arm_5 71 120 IPR000225 GO:0005515
Vivi6g03988 689 Gene3D Potassium Channel Kv1.1; Chain A 517 660 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03988 Vivi-Chr6 136903993 136909170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03988 249 494 U-box Gene Family AT2G23140 27.237 4.77e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi6g03988 BTB 1.3e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03988 - - vvo:131612489 1326.61