Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03987 ATGGATGGCAAGTTAACTTTGAAGAGGAAATTTGATTTCACTGAAGACGATGAATCAACCGTCGACGTTCTTCACGAAAGCTCTAGCCGTCTCTGTCTCGCCGACGATATTACTAAACGCGTCGGTCGGTTAAACTCGGTTTCTTTGTCGTCCGATCGAGATATCGGTGCTGCTCAAAATGATCTCTGTTTTCTTTCCGGATACGCTAAAGATGAGGACATTGTGGATCTTATGGTAGTTTGTGGCGTTGTTCCCACTATGGTGAAGCTTTTGCATTTGGTGTCTAATAGAGGTGAATTAGATTCTAATACTTACGATGTGGAAAAAGATTGTGTCTCTATCCTTGGTCATCTTGCTGTCAAGCCGGAGAATCAGCAACTCATTGTTGATGCGGGAGCTTTGCCTTGTCTTGTGGAATTGTTGATGAGACCTAAAGCACCTGGTGTTTCTCAAGCACTTTTTTCTCGTCTTCTTGGGAGAGTAGCTGATGCAATAACCAATCTTGCCCATGAAAATATCAACATCAAGACCCTTGTCAGGTTGGAAGGTGGCATCCCTCCTCTTGTTGATTTGCTTGAATCCAATGATAAAAAGGTACAGAGAGCTGCTGCAGGGGCTTTAAGAACTCTTGCATTTCAAAATGCTGAGAATAAAGACCAGGTAGTTGATTTGGCACAACAACTTACTATGGTGGATTATTTTTTTATAGTTGCTTACAAGAATATAAAATTACAGATTGTTGAATGCGATGCATTGCCCACTCTTGTACTAATGCTTGGATCAGAGGATCCTGCAATACATTATGAGGCGGTTGGTGTGATTGGAAATCTTGTCCATTCTTCGCCTGAAATTAAGAAAGAAGTTCTTCTAGCCGAGGCTTTACAACCAGTTATTTGCCTGCTAAGTTCCCCCTGTTTGGAGACCCAAAGAGAAGCAGCTCTTTTAATCGGTCAATTTGCCACAACAGATTCAGATTGCAAGATTCACATTGCCCAAAGAGGTGCTATAAACCCTTTAATCAAAATGCTTAAGTCTCCAGATTTACAACTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACTCACACAATCAAGCTGGCATTGCTTACAATGGAGGTATAGAGCCCCTCCTTAATCTTCTTGCTACTAAGAACGCTTCTGTCCAACACAATGCAGCTTTTGCTCTTTATGCTCTTGCTGATAATGAGGACAATGTTCCTCTTATTATTAAAGCTGATGGTTTACAAAAACTGCAGGATGGACATTTCAGTGTTCTACCTACTCGAGAGTGTGTAGCAAAGATGTTAAAAAGATTGGAAGAGAAGATGGAAGGGCGAGTACTGAAGCAAATGTTGCATCTTATGCGATCTGGGGAAAAGGTTGTTCAAAAACGTGTAGCTCTTGCTCTAGCACATTTATGTTCTGCCGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGAACATCTTGAATCTTCAAACAAAAAGCAGAAGCGTGAAGCCTCTGCAGCGCTTCACGCAATGGCTACCAAAGGAATAGGTGCCTCTATTGTTGATCTTGCGCCTACATCACCAACTTCCCAGGTTTACTTGGGTGAGCAATATGTAAACAATCCACTACTTTCTGATGTCACATTCTTAGTTGAAGGCAAAATCTTTTATGCTCATAAAGTTTGTTTAGTTTCATCTATTATATTTCGTGCAATGTTTGATGGGGGTTACAGGGAAAAGGAAGCCAAGGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACTGGAACAGTAGAAGTTGATTTGGAAGTTGCCCCGGACCTCCTTAAAGCTGCAGATCAATATCTGCTCGACGGTCTTAAGCGTATTTGTGAATCTGTTATTTCTAAGGATATTTCTGTGGAAAATGTTTCTCTAATGTATGTGATGTCAGACACATATAATGCTACATCGTTAAAATATTCATGCATACTCTTTATCTTGGAGCAATTTGATAACTTGAGCTCCAAACCATGGTATTGTCGCTTTATGCGTTGCATTAAGCCGGACATTTGGAACTTCTTCTGGACCTTACTTATCACGCCTAAACAAGCTGACTAG 2145 0.4042 MDGKLTLKRKFDFTEDDESTVDVLHESSSRLCLADDITKRVGRLNSVSLSSDRDIGAAQNDLCFLSGYAKDEDIVDLMVVCGVVPTMVKLLHLVSNRGELDSNTYDVEKDCVSILGHLAVKPENQQLIVDAGALPCLVELLMRPKAPGVSQALFSRLLGRVADAITNLAHENINIKTLVRLEGGIPPLVDLLESNDKKVQRAAAGALRTLAFQNAENKDQVVDLAQQLTMVDYFFIVAYKNIKLQIVECDALPTLVLMLGSEDPAIHYEAVGVIGNLVHSSPEIKKEVLLAEALQPVICLLSSPCLETQREAALLIGQFATTDSDCKIHIAQRGAINPLIKMLKSPDLQLREMSTFALGRLAQDSHNQAGIAYNGGIEPLLNLLATKNASVQHNAAFALYALADNEDNVPLIIKADGLQKLQDGHFSVLPTRECVAKMLKRLEEKMEGRVLKQMLHLMRSGEKVVQKRVALALAHLCSADDRKTIFIDNNGLELLLEHLESSNKKQKREASAALHAMATKGIGASIVDLAPTSPTSQVYLGEQYVNNPLLSDVTFLVEGKIFYAHKVCLVSSIIFRAMFDGGYREKEAKDIEIPNIKWNVFELMMRFIYTGTVEVDLEVAPDLLKAADQYLLDGLKRICESVISKDISVENVSLMYVMSDTYNATSLKYSCILFILEQFDNLSSKPWYCRFMRCIKPDIWNFFWTLLITPKQAD 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03987 714 Gene3D - 45 155 IPR011989 -
Vivi6g03987 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 132 183 IPR000225 GO:0005515
Vivi6g03987 714 Pfam Armadillo/beta-catenin-like repeat 182 211 IPR000225 GO:0005515
Vivi6g03987 714 Pfam Armadillo/beta-catenin-like repeat 243 278 IPR000225 GO:0005515
Vivi6g03987 714 Gene3D - 156 226 IPR011989 -
Vivi6g03987 714 Pfam BTB/POZ domain 544 645 IPR000210 GO:0005515
Vivi6g03987 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
Vivi6g03987 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 82 133 IPR000225 GO:0005515
Vivi6g03987 714 ProSiteProfiles BTB domain profile. 551 617 IPR000210 GO:0005515
Vivi6g03987 714 Coils Coil 489 509 - -
Vivi6g03987 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 218 IPR000225 GO:0005515
Vivi6g03987 714 SUPERFAMILY POZ domain 542 645 IPR011333 -
Vivi6g03987 714 SMART arm_5 323 363 IPR000225 GO:0005515
Vivi6g03987 714 SMART arm_5 281 321 IPR000225 GO:0005515
Vivi6g03987 714 SMART arm_5 479 519 IPR000225 GO:0005515
Vivi6g03987 714 SMART arm_5 239 279 IPR000225 GO:0005515
Vivi6g03987 714 SMART arm_5 364 404 IPR000225 GO:0005515
Vivi6g03987 714 SMART arm_5 171 212 IPR000225 GO:0005515
Vivi6g03987 714 SMART arm_5 121 170 IPR000225 GO:0005515
Vivi6g03987 714 SMART arm_5 71 120 IPR000225 GO:0005515
Vivi6g03987 714 Gene3D - 235 420 IPR011989 -
Vivi6g03987 714 Gene3D - 421 538 IPR011989 -
Vivi6g03987 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Vivi6g03987 714 Gene3D Potassium Channel Kv1.1; Chain A 542 685 IPR011333 -
Vivi6g03987 714 SMART BTB_4 551 647 IPR000210 GO:0005515
Vivi6g03987 714 SUPERFAMILY ARM repeat 73 423 IPR016024 -
Vivi6g03987 714 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 240 710 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03987 Vivi-Chr6 136903993 136909177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03987 274 519 U-box Gene Family AT2G23140 26.459 7.93e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi6g03987 BTB 1.3e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03987 - - vvo:131612489 1387.86