Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03984 ATGGACCGCAAGCAAAATTTGAAGAGGAAAATTACCGAAGAAGATGTTCTTCGTGAAAACTCTCGCCGTCTATATCTTATCGAAGATATTGTTCAACACATCGATCTGTTAAACTCAGTCTCTTCGTCGTATGATCCGGATATTGGTCATGCTCAAGATGCTCTATGTTTTCTTTCCGACCTCGCCAATGATGAGGATACTGTGAATCTTTTGGTAATTTGTGATGTCATTCCATCTCTGGTGAAGGTTTTGCATATGGTGTCTAATGGGGGTGAATTCGATGTTGATACTTACGATATTAATAGAGACTGTGTCTTTATCCTCGGTCTTATTGTTGTCAAGCCTGAGTATCAACAACTTATTGTTGATGCTGGAGCCTTGCCCTGTCTTGTAGACTTGTTGATGAGACCTAAGGCCCCTGATATTTCTCAAATACATTTTTCTCATCTTCTTGGGAGAGTAGCCGATGTAATAACCGATCTTGCTCATGATAATAACAGCATCAAGACCCTTGTCAGGTTGGAAGGTGGCATCCCTCCTCTTGTTGATTTGCTTGAATCCGATGATACAGAGGTACATAGAGCTGCTACAGAGGCTTTAAGAACTCTTGCATTTCAAAATGCTGAGAATAAAGACCAGGTGCTGGAGCAAATGTTATATCTTATGCGCTTCGGGGAAAAGGTTGTTCAGAAACGTGTAGCTCTTGCTCTTGCACATCTATGTTCCGCCGATGACCGTAAAGCTATTTTCATAGACAATAATGGATTAGAATTGTTGTTGAATCTTCTTGGATCTACAACCAAAAAGGAGAAGCGTGAAGCCGCTGAAGCGCTTCACACAATGGCTACCAAAGGAATGAGTGTCTCTATTGTTGATCTTGCGCCTGCATCCCCAACTCCACTGGTTTACATGGGTGAGCAATATGTTAACAATCCAGTACTTTCTGATGTCACATTCATAGTTGAAGGCAAACGCTTTCATGCTCATAGAGCTTGTTTACTTTCATCTGATATATTTCGCGCAATGTTTGATGGTGGTTACAAGGAAAAGGAATCCAAGGAAATAGAGATTCCCAATATCAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACCGGAACAGTAGCTGTTGATTTAGATATTGCCCTGGACCTCCTTAAAGCTGCAGATCAATATCTTCTCGACGGCCTTAAGCGTATTTGTGAATCTGTTATTTATGAGGACATTTCTGTGGAAAATGTTTCAGTAATGTATGTGATGTCAGACACCTATAATGCTACATCGTTAAAATATTCATGCATACTCTTTATCTTGAAGCATTTTGATAATGTGAGCGCCAAACCGTGGTATTCTCGCTTTATCCGTTGCATTAAGCCGGACATTCAGAACTTCTTCTCGACTTTACTTACCATGCCTAAACACGCTAGCTAG 1437 0.4043 MDRKQNLKRKITEEDVLRENSRRLYLIEDIVQHIDLLNSVSSSYDPDIGHAQDALCFLSDLANDEDTVNLLVICDVIPSLVKVLHMVSNGGEFDVDTYDINRDCVFILGLIVVKPEYQQLIVDAGALPCLVDLLMRPKAPDISQIHFSHLLGRVADVITDLAHDNNSIKTLVRLEGGIPPLVDLLESDDTEVHRAATEALRTLAFQNAENKDQVLEQMLYLMRFGEKVVQKRVALALAHLCSADDRKAIFIDNNGLELLLNLLGSTTKKEKREAAEALHTMATKGMSVSIVDLAPASPTPLVYMGEQYVNNPVLSDVTFIVEGKRFHAHRACLLSSDIFRAMFDGGYKEKESKEIEIPNIKWNVFELMMRFIYTGTVAVDLDIALDLLKAADQYLLDGLKRICESVIYEDISVENVSVMYVMSDTYNATSLKYSCILFILKHFDNVSAKPWYSRFIRCIKPDIQNFFSTLLTMPKHAS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03984 478 Pfam Armadillo/beta-catenin-like repeat 175 204 IPR000225 GO:0005515
Vivi6g03984 478 SUPERFAMILY POZ domain 303 409 IPR011333 -
Vivi6g03984 478 SUPERFAMILY ARM repeat 44 285 IPR016024 -
Vivi6g03984 478 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 212 475 IPR044282 -
Vivi6g03984 478 SMART arm_5 165 205 IPR000225 GO:0005515
Vivi6g03984 478 SMART arm_5 243 283 IPR000225 GO:0005515
Vivi6g03984 478 SMART arm_5 114 163 IPR000225 GO:0005515
Vivi6g03984 478 SMART arm_5 64 113 IPR000225 GO:0005515
Vivi6g03984 478 Pfam BTB/POZ domain 308 408 IPR000210 GO:0005515
Vivi6g03984 478 Gene3D - 217 310 IPR011989 -
Vivi6g03984 478 Gene3D - 146 216 IPR011989 -
Vivi6g03984 478 Gene3D - 27 145 IPR011989 -
Vivi6g03984 478 SMART BTB_4 315 411 IPR000210 GO:0005515
Vivi6g03984 478 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 176 211 IPR000225 GO:0005515
Vivi6g03984 478 Gene3D Potassium Channel Kv1.1; Chain A 311 449 IPR011333 -
Vivi6g03984 478 ProSiteProfiles BTB domain profile. 315 381 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03984 Vivi-Chr6 136857773 136861247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03984 154 263 U-box Gene Family AT5G40140 26.957 7.18e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi6g03984 BTB 2.3e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03984 - - vvo:131614774 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03984 6 136857773 136861247 Vivi6g03984 6 136857773 136861247 ECH