Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03982 ATGGACCGCAAGGAAACTTTGAAGAGGAAAATGGATTTCACCGAAGAAAATGAATCAGCCACCGATGTTGTTCACGAAAACTCTCGGCGTTTAACTCTCGCCGACGATATTAATCAACGCCTTGATCGGATTGACACAATTATTACACTGCCCGATCCAGATATTGCTTCTGCTCAAAATGATCTACGTGTTCTTTCTGAATTCGCAAACGACGATGATAATGTGGATCTTATGGTAGTTTGTGGTGCTATTCCCACTGTGATCAAGGTTTTGCATATGGTGTCTAATGGAGGTGAATTTGATGCTGATACTTACGACGTGGAAAAAGACTGTGTCTCTATCCTTGGTCATCTCGCGGTCAAGCCTGAGTATCAAAGCCTCATTGTTAATACTGGAGCCTTGCCTTGTTTTGAGGAATTGTTGTTGAGACCTAAAGCCCCTGGTGTTTCTCAAGCAATTTATTCTCGTCTTCTTGGGACAGTAGCTGATGCAATAACCAATCTTGCCCATGAAAATATGGGCAACAAGAACCTTGTCAGGCATGAAGGTTGCATCCCTCCTCTTGTTGATTTGCTTGATTCCATTGATACAAAGGCACAGAGAGCTGCTGCAGGGGCCTTGAGAACTCTTGCATTTCAAAATGCTGAGAATAAGGACCAGATTGTTGAATGTGATGCGTTGCCCACTCTTGTACTAATGCTTGGATCAGAGGATCCTGCAATACATTCTGAGGCGGTTGGTGTGATTGGAAATCTTGTCCATTCTTCGCCTGAAATTAAGAGAGAAGTTCTTCTAGAAGAGGCTTTACAACCAGTTATTTATCTACTAAGTTCCCCCTGTTTGGAGACCCAAAGAGAAGCAGCTCTTTTAATCGGTCAATTTGCCACAACGGATACAGATTGCACGATTCAAATTGCCCAAAGAGGTGCTATAAACCCTTTAATCAAAATGCTTAAGTCTCCAGATTTACAACTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACTCAGACAATCAAGCTGGCATTGCTTACAATGGAGGTATAGAGCCTCTCCTCAATCTTCTAGCTGCAAGGAATCCTTCTGTCCAACACAATGCAGCTTTTGCTCTTTATGCTCTTGCTGATAATGAGGACAATGTTCCTCTTATTATTAAAGCTGACGGTTTACGAAAACTGCAGGCTGGACATTTCACTGTGCTACCTACTCAAGAGTGTGTAGCTAGGATGTTAAAAAGATTGGAAGAGAAGATGGAAGGGCGAGTACTGAAGCAAATGTTATATCTTATGCGCTCCGGGAAAAGGGCTGTTCAGAAACGTGTAGTTCTTGCTCTTGCACAGTTATGTTCCGCCGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGTATTTTCTTGGATCTACAATCGAAAAGAAGCGTGAAGCCTCTATAGCGCTTCACACAATGGCTACTAAAGGAATAAGTGGCTCTATTGTTGATCTTGTGCCTGTATCACCAACTCCCCGGATTTACTTGGATGAGCAATATGTAAACAATCCAGCGCTTTCTGATGTCACATTCATAGTTGAAGGCAAACGCTTTCATGCTCATAGAGCTTGTTTACTTTCATCTGATATATTTCGCGCAATGTTTGATGGTGGTTACAAGGAAATGAAAGCCAAGGATATAGAGATTCCAGATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACGGCGGAACAGTAGATGTTGATTTGGATGTTGCCCCAGACCTCCTTAAAGTTGCAGATCAATATCTTCTCGACGGTCTTAAGCGTATTTGTGAATCTGTTATTTCTAAGGATATTTCTGTTGAAAATGTTTCAGTAATGTATGTGATGTCAGACACTTATAATGCTACATCGTTAAAATATTCATGCATACTCTTTATCTTGGAGCAATTTGATAACTTGAGCTCCAAACCATGGTATTCTCACTTTATGCGTTGCATTAAGCCAGACATACGGAAATTCTTCTCGACTTTACTTACCATGACTAAACACACTGGCTAG 2067 0.4098 MDRKETLKRKMDFTEENESATDVVHENSRRLTLADDINQRLDRIDTIITLPDPDIASAQNDLRVLSEFANDDDNVDLMVVCGAIPTVIKVLHMVSNGGEFDADTYDVEKDCVSILGHLAVKPEYQSLIVNTGALPCFEELLLRPKAPGVSQAIYSRLLGTVADAITNLAHENMGNKNLVRHEGCIPPLVDLLDSIDTKAQRAAAGALRTLAFQNAENKDQIVECDALPTLVLMLGSEDPAIHSEAVGVIGNLVHSSPEIKREVLLEEALQPVIYLLSSPCLETQREAALLIGQFATTDTDCTIQIAQRGAINPLIKMLKSPDLQLREMSTFALGRLAQDSDNQAGIAYNGGIEPLLNLLAARNPSVQHNAAFALYALADNEDNVPLIIKADGLRKLQAGHFTVLPTQECVARMLKRLEEKMEGRVLKQMLYLMRSGKRAVQKRVVLALAQLCSADDRKTIFIDNNGLELLLYFLGSTIEKKREASIALHTMATKGISGSIVDLVPVSPTPRIYLDEQYVNNPALSDVTFIVEGKRFHAHRACLLSSDIFRAMFDGGYKEMKAKDIEIPDIKWNVFELMMRFIYGGTVDVDLDVAPDLLKVADQYLLDGLKRICESVISKDISVENVSVMYVMSDTYNATSLKYSCILFILEQFDNLSSKPWYSHFMRCIKPDIRKFFSTLLTMTKHTG 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03982 688 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 684 IPR044282 -
Vivi6g03982 688 SUPERFAMILY POZ domain 516 619 IPR011333 -
Vivi6g03982 688 Pfam Armadillo/beta-catenin-like repeat 214 253 IPR000225 GO:0005515
Vivi6g03982 688 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Vivi6g03982 688 Pfam BTB/POZ domain 517 619 IPR000210 GO:0005515
Vivi6g03982 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 218 IPR000225 GO:0005515
Vivi6g03982 688 Gene3D Potassium Channel Kv1.1; Chain A 516 659 IPR011333 -
Vivi6g03982 688 ProSiteProfiles BTB domain profile. 525 591 IPR000210 GO:0005515
Vivi6g03982 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 350 392 IPR000225 GO:0005515
Vivi6g03982 688 Gene3D - 16 195 IPR011989 -
Vivi6g03982 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 351 IPR000225 GO:0005515
Vivi6g03982 688 SUPERFAMILY ARM repeat 422 491 IPR016024 -
Vivi6g03982 688 SMART BTB_4 525 621 IPR000210 GO:0005515
Vivi6g03982 688 Gene3D - 196 503 IPR011989 -
Vivi6g03982 688 SMART arm_5 172 212 IPR000225 GO:0005515
Vivi6g03982 688 SMART arm_5 339 379 IPR000225 GO:0005515
Vivi6g03982 688 SMART arm_5 454 493 IPR000225 GO:0005515
Vivi6g03982 688 SMART arm_5 71 120 IPR000225 GO:0005515
Vivi6g03982 688 SMART arm_5 121 170 IPR000225 GO:0005515
Vivi6g03982 688 SMART arm_5 298 338 IPR000225 GO:0005515
Vivi6g03982 688 SMART arm_5 214 254 IPR000225 GO:0005515
Vivi6g03982 688 SMART arm_5 256 296 IPR000225 GO:0005515
Vivi6g03982 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 225 252 IPR000225 GO:0005515
Vivi6g03982 688 SUPERFAMILY ARM repeat 52 396 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03982 Vivi-Chr6 136845450 136850252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03982 265 493 U-box Gene Family AT5G67340 27.083 3.68e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi6g03982 BTB 4.4e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03982 - - vvo:131612489 1060.83