Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03971 ATGAAAAACACCGACCATTATGATTCGTACGACTATCGATGCCGTGACAGTGGTACATCTGATTCTGAATCCGACAATGGTCGGGATGACAGTAATTCGGTGTCCAGTGCGTACCAAGGTTCAAGTGATGGTGATGGCGATGGCGATGGTGATAGTCACGGTGAAAAATTTGTTGAATTTGATGCAGTTGTAGGTGATAGAACAGTGAAAATTAATGCCCTTACTGCTGATGAAATTCGTGCTATGGAATTCGGTACAGTTGATGAAGCTAATGTGTTTTATTTCAAGTATGCTAAATGTAAAGGGTTTGCCATTAGGAAAAGTGATGTTAGGACAAGATCGACTGAGGATGGACAAACAATTATAATGAGGCAGTTTGTATGCAATAAACACGGTCTAAGAGATACAAAACACTTAAGGAGGCTTGATAGAAAAAGAGAACACAGACCTACGACCCGCACTAATTGTCCCGCTAGGCTTCGTGTGCATTACAACCCCCAGAAGGATAGTTATGTAGTGACATGTTTTGAAGAGGCTCACAACCATGAATTAACACCATCTAGGTTTGTCCACTTACACCCCATTTATCGTGAGATTACTGCAGCAGATAGAGCTCAAATTGACGGTCTACAGTCAAATGGAATTAGAACTTGTCATATAATGGGGTACATGGTTGCTCAGAAGGGTGGACACGATCGTGTTGGGTTTACAAAGAAGGATCTGTACAATTATTTTGATAGTAAAATGCGTGCTAATATTAAAGATGGTGACGTTGCCGCTGCTATAAATTATCTAACTGTGAAGTCATCTACTGATCCCATGTTATATGGTAAATATGCCGTAGACATGGATGGACGAATGAAGTCTCTTTTTTGGGCTGATGGAAGCAGTAGATCTGACTATTTTTGTTTTGGCGATGTGATTGCGTTCGACACGACTTACAAGAAGAACAAATACAACTACCCATTGGTTATATTTTCAGGGTGTAACCACCACTCTCAGACAGTTATTTTTGGTGCTGCGTTGGTGTCAGATGAAACGACAGAGACGTATAAGTGGTTGTTGGAGTGTTTTTTAGAGTGCATGGAAAATAGATACCCAGCAGCAGTTGTAACAGACGGAGATGGGGCGATGAGGGAATCTATAAAACAGGTGTTTCCGGATGCGACACATCGTTTATGCGCTTGGCATTTGAACAAGAATGCGTCTGAGAATGTAAAGAACTCGGCATTTTTGAAAGATTTTCAAAAAGCCATGTACTCTAATTTTACAAAGGATCAATTTGAAGAGTTTTGGTCAAAAATAATTAAAGAAAACGGACTTGAAGGAAATCCTTGGGTTGCAAAAACGTACGAGAACAGGTCACTATGGGCAACTGCATATCTACGTGAGAAGTTTTTTGGACGCTATGAGATCTTATAG 1422 0.4044 MKNTDHYDSYDYRCRDSGTSDSESDNGRDDSNSVSSAYQGSSDGDGDGDGDSHGEKFVEFDAVVGDRTVKINALTADEIRAMEFGTVDEANVFYFKYAKCKGFAIRKSDVRTRSTEDGQTIIMRQFVCNKHGLRDTKHLRRLDRKREHRPTTRTNCPARLRVHYNPQKDSYVVTCFEEAHNHELTPSRFVHLHPIYREITAADRAQIDGLQSNGIRTCHIMGYMVAQKGGHDRVGFTKKDLYNYFDSKMRANIKDGDVAAAINYLTVKSSTDPMLYGKYAVDMDGRMKSLFWADGSSRSDYFCFGDVIAFDTTYKKNKYNYPLVIFSGCNHHSQTVIFGAALVSDETTETYKWLLECFLECMENRYPAAVVTDGDGAMRESIKQVFPDATHRLCAWHLNKNASENVKNSAFLKDFQKAMYSNFTKDQFEEFWSKIIKENGLEGNPWVAKTYENRSLWATAYLREKFFGRYEIL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03971 473 PANTHER OS01G0519700 PROTEIN 79 455 - -
Vivi6g03971 473 MobiDBLite consensus disorder prediction 1 52 - -
Vivi6g03971 473 MobiDBLite consensus disorder prediction 1 28 - -
Vivi6g03971 473 Pfam FAR1 DNA-binding domain 93 185 IPR004330 -
Vivi6g03971 473 Pfam MULE transposase domain 307 401 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03971 Vivi-Chr6 136548792 136550314 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi6g03971 MULE 4e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03971 - - vvo:131620026 886.715