Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03949 ATGGATGGTGGTGACGTTATTGGCCATGGAGTAATGCAAGTTAACTCTGAAGCACACGATGGGATTTTTCATGAGAATGGTCGTGTTAACGATGACGGTGAACTGGATTTTGTTAGTGATGGATGCTTGGATAATGTTGAATATGACAACAGAGTTGTTGATGAAGATTCTGAGTTTGAAGAAGTTGAATACTATGATGAAGATGCGGAAGAAGATAATGAATTTTACGGATGTGAATACGATGATGAAGATGGAGATGATGATGGCGAATTAGATGGTGATGATTATGATGACGAGATAGGTTCCGGTTATGTTAGTGGACACGAATATTGGAATACAGATTCAAACGGCGGTGGAATTTCTGGGGAAGGATCGGAATGGGGTTCGGACAGATTGAATGAATCGATATCTTCAGATCAACTTCCAGACGAATCATTTGTTGTTGACGAGTTTGACGACATTGCAAATATGGACATGTTTAACTTGCAATGTGATGATGTTTCGAAGCTGCAATTTGGAAGTCTGGAAATAGCTTACACATGGTACTGTTGGTTTGCAAAGATGAACGGTTTTGCAGTCCGTAAAGGTCAAGTTATTAAAAAAAAGAGTGGAGATGTTACTCAACAAACATTTCTTTGTAACCTTGCAGGATTTAGGCAAAACAAAGTAGATAATCGCAAACGTGGTCTGAGGCACGAAACCCGGTGTGGATGTGAAGCAAAATTTCGGGTTCATATTGATATAATTTCACACCGTTGGTATGTCACAGTTTTTACCTTTGAGCACAATCATGCAATGTTAAAGGAGAAGCACTGCAGGCTGTTGGCAGGTAATAGGAAGCTTAGTAAGTCAGATAAGATGCAAATTAAGAATTTTGGGAATGCCGGAATCAAAGTAACTCAAATGATTGGTTCATTCGCTAATGCTACCGGGGGGTATGATAAGGTAGGATTTTTGAAGAAGGATGTACATAATCAAATTGCAAGACAAAGGAAAGAGATGTCTTCTGATGCTAAAGGTGCTGTCAGGTATCTTATTGATCTTCGTGTAATAGATCCATTGATGCTTGTTGCACACACGGTGGGTGCGGATGGAACGTTGCAAAACCTATTTTGGAGCGACGGTGAGAGTCAAAAGAATTATGAACTGTTTGGTGATGTGCTTGCTTTTGATGCTACCTACAAGAAAAATAAGTACAGGTGCCCATTTGTTGTTTTTTCTGGTGTTAATCACCATAACCAGACGATTATATTTGCTACTGCCATAGTTTCAAATGAGGTTGAAGGGACATATGTATGGTTGCTGGAGCAGTTTTTGGTTGCAATGAAAGGTAAGACACCTTTATCTGTAATAACGGACGGTGATGTTGCTATGAGAAATGCAATCAGGAAAGTCTTTCCCAACAGTTACCACAGGTTATGTGCATGGCATCTCCTACGAAATGCAATTTCCAACATTAGCAATCCCAATTTCATCCCTGTTTTCAAAAAATTAATGCTTGGTGATCACGATGTTTGGAAATTTGAGAGTCTGTGGAATGAAATGTTAGATAGGTTTGGGTTAGAAGATAATAATTGGATCAATGAATTGTACCAGAAAAGGAAGATGTGGGCAACAGCTCATATTAGGGGAAATTTCTTTGCAGGAATAAGAACGACATCGCGGTGCGAAGCATTTCATAGTCATATGGGACAGTTTGTACACTCGAGGATGAATATGACTGATTTTGTTAAGCAGTTCCATAGGTGTGTGGCATATTTTCGATTTAGAGAGGTTCAAGCTGATTTTGAATCCCAATATGGACAGGCAGTGTTGCATACCAATCTTAGGGCGCTTGAGAGGTCAACATCAAAGCACTGGACAAAAGAGATATTTGAAATGGTACGATCTGTTATGAAAAAGGTAACCTTAACATCTGTATTAGATATTCAAGATATGGCATCAGTTACCATTTATGCGGTGACAAAATACAGAGACGAAGGGCATGGATGGCGTGTTTCCCACTGTTCATCGAATAACGATTTCAGATGCTCGTGTCTTAGAATGGAATCCATTGGGATTCCTTGTGAGCACATTGTTGCTGTGATGGTTTATCTTAATATTGTAGAATTTCCTGAGAATCTTGTGCTGAATCGTTGGTCATTATATGCGAAGGAGTCTATTAGTGGAAGTTATGAAGATGGTTCCCACTACTGGGATTCACATTTGGTTGCTAGACACGCTACTTTGGTGAATCTTAGTAAGGAGGTCGCTGACTTGTCATATATGGATGTTGATGATTACAAAAAATATTTAGAATATCTGACTAATGAACTTTGTAGGCTTAAATCGAAGTACAACAATGAAGATGTTCCAGATAACATACATGTTGAAGAGGAGTTGGTGAATATACTTAACCCCTTCATGTTCAAGAAGCAAGGGTTGTGGACCAGTTTGAAATTCAGTGAAGTGATGAAGCAATGCCAAAATGATGTTATGCTGCTTGTTTGGCAAGGAAGTTATACTGATTTTGTAATTTTGGGTGCTGTGTTGCAAATGTGGGATTTGTTTTGTAATAGGCATTTGGTGCATCAACATAGTTTCAGTGGCAGCTACTATTATATCATCACTTTCCTCTAA 2619 0.3895 MDGGDVIGHGVMQVNSEAHDGIFHENGRVNDDGELDFVSDGCLDNVEYDNRVVDEDSEFEEVEYYDEDAEEDNEFYGCEYDDEDGDDDGELDGDDYDDEIGSGYVSGHEYWNTDSNGGGISGEGSEWGSDRLNESISSDQLPDESFVVDEFDDIANMDMFNLQCDDVSKLQFGSLEIAYTWYCWFAKMNGFAVRKGQVIKKKSGDVTQQTFLCNLAGFRQNKVDNRKRGLRHETRCGCEAKFRVHIDIISHRWYVTVFTFEHNHAMLKEKHCRLLAGNRKLSKSDKMQIKNFGNAGIKVTQMIGSFANATGGYDKVGFLKKDVHNQIARQRKEMSSDAKGAVRYLIDLRVIDPLMLVAHTVGADGTLQNLFWSDGESQKNYELFGDVLAFDATYKKNKYRCPFVVFSGVNHHNQTIIFATAIVSNEVEGTYVWLLEQFLVAMKGKTPLSVITDGDVAMRNAIRKVFPNSYHRLCAWHLLRNAISNISNPNFIPVFKKLMLGDHDVWKFESLWNEMLDRFGLEDNNWINELYQKRKMWATAHIRGNFFAGIRTTSRCEAFHSHMGQFVHSRMNMTDFVKQFHRCVAYFRFREVQADFESQYGQAVLHTNLRALERSTSKHWTKEIFEMVRSVMKKVTLTSVLDIQDMASVTIYAVTKYRDEGHGWRVSHCSSNNDFRCSCLRMESIGIPCEHIVAVMVYLNIVEFPENLVLNRWSLYAKESISGSYEDGSHYWDSHLVARHATLVNLSKEVADLSYMDVDDYKKYLEYLTNELCRLKSKYNNEDVPDNIHVEEELVNILNPFMFKKQGLWTSLKFSEVMKQCQNDVMLLVWQGSYTDFVILGAVLQMWDLFCNRHLVHQHSFSGSYYYIITFL 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03949 872 SMART 26again6 675 702 IPR006564 GO:0008270
Vivi6g03949 872 Pfam SWIM zinc finger 671 699 IPR007527 GO:0008270
Vivi6g03949 872 ProSiteProfiles Zinc finger SWIM-type profile. 664 700 IPR007527 GO:0008270
Vivi6g03949 872 Pfam FAR1 DNA-binding domain 181 267 IPR004330 -
Vivi6g03949 872 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 167 756 IPR031052 GO:0006355
Vivi6g03949 872 Pfam MULE transposase domain 387 481 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03949 Vivi-Chr6 136221771 136225224 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi6g03949 MULE 3.1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03949 - - vvo:131598033 1091.64