Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03942 ATGGAGCAGTATGAAGTTCTAGAACAGATCGGCAAAGGTGCATTTGGTTCTGCGCTACTTGTGCGGCACAAACATGAAAAGAAAAAGTATGTTCTCAAGAAGATCCGTCTTGCTCGCCAAACTGACAGAACACGCAGATCGGCTCACCAGGAGATGGAACTTATATCTAAAGTTCGCAATCCGTTTATTGTGGAGTATAAAGATTCTTGGGTAGAAAAGGGTTGTTTTGTATGTATTATCATCGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCCAATAGTGTTAACTTTTCTGAAGAGAAACTCTGCAAGTGGCTCGTTCAGTTACTGATGGCACTAGATTACTTACATGTAAATCATATTCTTCATCGTGATGTTAAGTGTTCAAATATATTCTTAACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTCGCTAAAATGTTGACTTCTGATGATCTTGCTTCCTCAATTGTTGGGACTCCAAGTTATATGTGCCCTGAGCTTCTTGCTGATATACCGTACGGCTCTAAGTCAGATATCTGGTCTTTAGGATGCTGTGTTTATGAAATGGCCGCTCACAGGCCAGCTTTTAAAGCTTTTGATATAGAAGCATTGATTCACAAAATAAACAAATCTGTAGTAGCTCCACTGCCAACTATGTACTCTAGTGCTTTCCGAGGGCTTGTCAGAAGTATGCTGCGGAAAAATCCAGAGCTAAGGCCAACTGCTGGAGAGTTACTAAATCATCCACATCTTCAGCCTTACATTTTGAAAATTCACCAAAAACTAAATAGCCCCAGAAGAAGTACTTTTCCGTTCCAATGGTCCGAATCAAACTATGCAAGGAGAACTCGCTTTGTGGAACCAGAATCTGTTTCTACACTTTCTGACCAAGACAGATACTTGTCCCTAAACAATCACAGGGCGTTGAATCCTAGTATTTCTGGTACCGAGCAAAGTTCTCAATATTCAACTCAAAGAGCTCAAGGATTATCCAATTGTTCAGAAGAGAAGCTCTATGACTTATCTGCTGGCGGTGTACGTGATTACTGCAATACTAACAAATCAAAAACGATAAAGTCCTCAACTGGTGAGAGAACACCAAGAATTAGAGTAGCTAAGGATTCTGCTGGTGCCAGAAGACAGACAATGGCACCACCTAAGATATTGGTTGCTGGTTCAAAGCGTGAATCAATTCCGGTACCTCGCGCACCATCTGGTAAATCTACCATGCCAACTCGAAGAACATCTCTTCCGCTGCCTACAAGAGGCAGGAACACAACAAACTTATACACTGATGCTAGTTATGTGAATTCTCCGGATGTTTCTGTTGATGCCCCACAAATCGACAAGATTGCAGAATTTCCAATGGCTTCGTATGAGGATCCATTCTTCCATGTTATTCGCAGATCATCATCACCATCAGGAAAACACATTTCTAACTCAGCAGGAAGTACTGATTGCACGATCACAAAAGACAAGTGTACAATCCTTGTGGACAAAGTTACTGTCCCAGCTAGCATCACTAATGAGTGCTCGAACAATGTTACAACTGGTGTTTCAAGCCACTCCTCATCCGAGTCGCGTGAACATCGGTTTGACACCTCGTCATATCAGCAACGCGCCGAGGCATTGGAGGGGCTACTGGAGTTCAGTGCTAGGCTGCTACAACAACATAGGTTTGATGAGCTTGGGGTATTGCTGAAGCCATTTGGGCTCGAGAAGGTTTCCCCAAGGGAAACAGCTATTTGGTTGGCCAAGAGCTTTAAACAAAACTCTTGA 1800 0.4244 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANSVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHRPAFKAFDIEALIHKINKSVVAPLPTMYSSAFRGLVRSMLRKNPELRPTAGELLNHPHLQPYILKIHQKLNSPRRSTFPFQWSESNYARRTRFVEPESVSTLSDQDRYLSLNNHRALNPSISGTEQSSQYSTQRAQGLSNCSEEKLYDLSAGGVRDYCNTNKSKTIKSSTGERTPRIRVAKDSAGARRQTMAPPKILVAGSKRESIPVPRAPSGKSTMPTRRTSLPLPTRGRNTTNLYTDASYVNSPDVSVDAPQIDKIAEFPMASYEDPFFHVIRRSSSPSGKHISNSAGSTDCTITKDKCTILVDKVTVPASITNECSNNVTTGVSSHSSSESREHRFDTSSYQQRAEALEGLLEFSARLLQQHRFDELGVLLKPFGLEKVSPRETAIWLAKSFKQNS 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03942 599 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03942 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vivi6g03942 599 SUPERFAMILY Protein kinase-like (PK-like) 1 330 IPR011009 -
Vivi6g03942 599 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03942 599 Gene3D Transferase(Phosphotransferase) domain 1 86 335 - -
Vivi6g03942 599 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vivi6g03942 599 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vivi6g03942 599 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03942 599 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Vivi6g03942 599 MobiDBLite consensus disorder prediction 404 432 - -
Vivi6g03942 599 MobiDBLite consensus disorder prediction 415 432 - -
Vivi6g03942 599 CDD STKc_Nek 3 258 - -
Vivi6g03942 599 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vivi6g03942 599 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03942 Vivi-Chr6 136119026 136124101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03942 10 289 MAP Kinase Kinase Kinase AT1G53570 30.100 9.35e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vivi6g03942 Pkinase 6.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03942 K08857 - gmx:100805201 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03942 6 136119026 136124101 Vivi6g03942 6 136119026 136124101 ECH
Vivi6g03942 6 136119026 136124101 Vivi1g06454 1 146279932 146284041 PCT