Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03938 ATGAACTATCTGTATCCGGTGAAAGAGGAGTATTTGGAATTCGAAGCATCCTCGTCGACAACATCAATGGTTGGTGTTCCACGACCAATGGAGGGTCTTCATGAAGTTGGACCGCCACCATTTCTAACAAAAACTTTCGATGTTGTTGAGGATCCCACAACTAGTCACATAGTCTCATGGAACAGAGACGGTGTTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCCAGAGACCTTCTTCCTCGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAACTCAACACTTATGGATTTAGAAAAATCGATCCTGATAAATGGGAGTTTGCGAACGAAGGATTTCTGAGAGGGCATAAGCATCTTTTAGCGAACATTAAGAGAAGGAGACAAACATCTCAACCTAGTACTTCTTCATCTTCTTCTTCTCAACAATCATCATTTGGTCAATGTGTTGAAGTTGGTCGTTATGGATTAGACGAAGAAATCGATCATTTGAAGCGCGATAAACAAGTGTTAATGATGGAGCTTGTGAAGCTGAGACAGCAACAGCAGAATACAAGGTCTTGTCTTCAAGCTATGGAGGAGAGGTTAATAGGGACAGAGATTAAGCAGCAACAGATGATGGCTTTTTTGGCTAGAGCTATGAGAAATCCTGCTTTTATTCAGCAGTTGCTTCAGCATAAGGAGAGGAGAAAGGTGATTGAAGAAGATGTTACTAAGAAGAGAAGAAGGCCTATTGAGTATGGCGAATCAAGCAATAGTGTTGAATTTGGGTTCGGGTTTGAAGTGTCAGAGTTGGAGGTTTTAGCTATGGAAATGCAAGGTCTTGGAAGAGGTGGAGGAGAACAAGAGCAAGAGGAAGAAGAGATTGAGGTAGGTTTTGCAGAGCTGTTGAATGGACAAGAATCTCTGATAGTTGATAGAGATGATTATTTGCTCTCAAGATTGATTCAGAAGATGTAG 969 0.4087 MNYLYPVKEEYLEFEASSSTTSMVGVPRPMEGLHEVGPPPFLTKTFDVVEDPTTSHIVSWNRDGVSFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHLLANIKRRRQTSQPSTSSSSSSQQSSFGQCVEVGRYGLDEEIDHLKRDKQVLMMELVKLRQQQQNTRSCLQAMEERLIGTEIKQQQMMAFLARAMRNPAFIQQLLQHKERRKVIEEDVTKKRRRPIEYGESSNSVEFGFGFEVSELEVLAMEMQGLGRGGGEQEQEEEEIEVGFAELLNGQESLIVDRDDYLLSRLIQKM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03938 322 Gene3D - 34 131 IPR036388 -
Vivi6g03938 322 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g03938 322 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g03938 322 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g03938 322 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 256 IPR027725 -
Vivi6g03938 322 MobiDBLite consensus disorder prediction 130 150 - -
Vivi6g03938 322 Coils Coil 164 184 - -
Vivi6g03938 322 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g03938 322 SUPERFAMILY "Winged helix" DNA-binding domain 37 130 IPR036390 -
Vivi6g03938 322 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi6g03938 322 FunFam Heat shock transcription factor 1 34 131 - -
Vivi6g03938 322 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03938 Vivi-Chr6 135959845 135962787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03938 15 293 HSF AT3G22830 55.205 3.53e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi6g03938 HSF_DNA-bind 4.6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03938 K09419 - gmx:100811798 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03938 6 135959845 135962787 Vivi1g06465 1 146460975 146463241 PCT