Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03933 ATGAGTCTGGAAAAGAATCCTTGTGTGTTTTTCGATGTATCGGTTGATGGGGATCCGGTTGAAAGAATTGTTATTGAGCTTTTTTCTAGCGTAGTTCCCAAGACAGCTGAGAATTTCCGGGCCCTGTGTACAGGTGAGAAGGGGATTGGAGAATCTACGGGGAAACCTTTGCATTATAAAGGAACAGGTTTTCATCGTATAATTAAAGGTTTCATGGCTCAAGGTGGTGATTTTTCAAGAGGCAATGGTACAGGTGGAGAAAGTATATATGGAGGAAAATTTGCAGATGAAAATTTCAAACTTAAACATGATGGACCTGGCGTTCTTTCTATGGCTAATAGTGGTCCTAACACCAATGGATCACAGTTTTTTATTATATTCAAGCGCCAGCCTCATCTTGATGGGAAGCATGTTGTTTTTGGAAAAGTTACCAAAGGATTAGAGATTCTGAAGAAAATGGAGCAGTTGGGGACGTCAGACGGGAAACCTACCAAGCCTATTAAAATTGTTGATTGTGGTGAAGTCTCTAAAGCAAAAGGCCAGCATACAGTTGAGAAGGAGAAAGGGAAAAGGAGAAAGTCAGTAAAATCCTTAACATCTGACGATAGCTCTGATGCTGACAAAAAAATAAGTAGAAAAAGAAAAATATCTTCCAAAGGCAGGAGAAAGAGAAGGAGGAGATACTCATCATCTGATAGTGACAGTGATAGTTATTCCTCAGATTCTGAATCAGATTCATCTTCAGATTCCGAATCAGATTCAGATTCATCGTCTTCTGATTCAAGTTCTTCTAGCTATGGGAAACACCAGAAGAGGAAGAGAAATAAACGCAGGCATGGGAAGAAGAAAAGTATTGGGCGGAAACCGAAAAGAAGCCAGCACAATCGTAGAAGATCAAAACACAAGTCCAAAAGGAGTTCTGACAGTTCAAGTGACACTGAAAGTGACAGTTCTAGTGCTAGTGACAGTAGTTCTGGTGATAGGAAGGCTGATCGCCGTGTTTCTGGTCGTAAAATACAAGCCGACAAAGCTAAAAATAATCAAGACATAGGAAAGCCATCCTCTAGCCTTCCCTTACAAAGTCAAACCATTCCAGAACTAGTGGTGGATTCTAAAGTTAGAACGTCTGTGGACAAGCAATCGCACGAAGAAGGTGAATTGTCTCCAGAAAATGGCGAATTTCTGAATAACGGGCATGATACTCAAGCTGAATTCACTAAACCTGCTAATCATCGGGCTTATTCAGATGATTCAAATCACAATAGAGATGTGAGTCCTGGAAGAAGTCCTGCCAAGAATTCTAGGGAGCTGAGCCAAGGACGTGCTCTAGCGGCTAGCCCTGATAAAAAATCATCTGAACCTGCTGCAGCTGCCTCCAAACATGGCCATGGCATTTCAAAAAGCCCTTCGCCAAATGGTAAGCGTGTTAAAAAAGGACGAGGCTTTACTGAGCGCTTTGCCTTTGTACGCAGATATCGTACTCCATCTCCAGAACGGTCTCCCCGTGCATATCGTTATGGGGATAGAAATGTTAGAAGGAACTTTGATAGAAATACAAGCTACAGAAGCTATTCTGAGCGCTCACCACCACGACGTTTTCGAAGCCCACCAAGGGGAAACCGTCCCAGATATCAAAGCAGAAGAAGTCAGAGCAGGAGCATCTCCCGCAGTCCAGTACGAGGCCGCTACAGAGACAATGGTCGTGGCCGGAGTCCAAAACGCAGTGTTAGCCCGGAAGACAAGCGACCTCCCATAAGTGACAGATTAAAATCTCGACTTGGTGGACGAGGTAATCAACAATCTCCTGACAGACAGAGGTCAAAGTCAAATTCGAAGAGCAATGGCATTTCTCGATCCAGATCCCCTGACGATACACCCCCAAAGCGTTATAATAAGAGGACTTCCATATCTCGTAGCAGGTCTAGATCAAGTTCTGCATCAGGACAGAAGGGGTTGGTTTCCTATGGAGATGCTAGTCCTGATTCTGGAGCTAGGTAG 1998 0.4359 MSLEKNPCVFFDVSVDGDPVERIVIELFSSVVPKTAENFRALCTGEKGIGESTGKPLHYKGTGFHRIIKGFMAQGGDFSRGNGTGGESIYGGKFADENFKLKHDGPGVLSMANSGPNTNGSQFFIIFKRQPHLDGKHVVFGKVTKGLEILKKMEQLGTSDGKPTKPIKIVDCGEVSKAKGQHTVEKEKGKRRKSVKSLTSDDSSDADKKISRKRKISSKGRRKRRRRYSSSDSDSDSYSSDSESDSSSDSESDSDSSSSDSSSSSYGKHQKRKRNKRRHGKKKSIGRKPKRSQHNRRRSKHKSKRSSDSSSDTESDSSSASDSSSGDRKADRRVSGRKIQADKAKNNQDIGKPSSSLPLQSQTIPELVVDSKVRTSVDKQSHEEGELSPENGEFLNNGHDTQAEFTKPANHRAYSDDSNHNRDVSPGRSPAKNSRELSQGRALAASPDKKSSEPAAAASKHGHGISKSPSPNGKRVKKGRGFTERFAFVRRYRTPSPERSPRAYRYGDRNVRRNFDRNTSYRSYSERSPPRRFRSPPRGNRPRYQSRRSQSRSISRSPVRGRYRDNGRGRSPKRSVSPEDKRPPISDRLKSRLGGRGNQQSPDRQRSKSNSKSNGISRSRSPDDTPPKRYNKRTSISRSRSRSSSASGQKGLVSYGDASPDSGAR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03933 665 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
Vivi6g03933 665 MobiDBLite consensus disorder prediction 372 389 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 325 345 - -
Vivi6g03933 665 CDD cyclophilin_ABH_like 7 173 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 177 665 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 542 557 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 637 652 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 424 440 - -
Vivi6g03933 665 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 175 - -
Vivi6g03933 665 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vivi6g03933 665 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vivi6g03933 665 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Vivi6g03933 665 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Vivi6g03933 665 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Vivi6g03933 665 Gene3D - 1 182 IPR029000 -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 178 212 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 268 304 - -
Vivi6g03933 665 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Vivi6g03933 665 SUPERFAMILY Cyclophilin-like 4 175 IPR029000 -
Vivi6g03933 665 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Vivi6g03933 665 MobiDBLite consensus disorder prediction 593 621 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 558 589 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 233 265 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 347 369 - -
Vivi6g03933 665 MobiDBLite consensus disorder prediction 477 520 - -
Vivi6g03933 665 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 17 173 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03933 Vivi-Chr6 135792441 135797915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03933 25 171 U-box Gene Family AT5G67530 48.993 1.44e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03933 K09566 - gmx:100791082 767.303