Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03920 ATGGCCAATAACCCCTCCGACGCACCCGCCGCCGATGACTTCCTCGAACAAATCCTCAGCCTACAGACCTTCGCTTCCGCCGACTCTGGATTGACCGGACCCGACATCTCTCTGACGGGAACCTCGCCGATGATGCTGCAGCTCAACTCCTCCGACGCCAACCATCACCTCGCCGCCGGAGGTTCCTTTCATGCGCCGGTGTACCAGTTAGGGTTGAGCTTAGACCAAGGCAAAGGAGGAGGGTTTTTGAAGCCGGAGGAAGCCTCTGGTAGCGGGGAACGCTTCCGCAACGACGTCGTTCATGGTAGACCTAATAATGTTTTTCATGGGCAACCCATGCATACAACTGTTCCTGCTGCTCCACATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACGGATCCTCACAGCATAGCTGAGCGATTACGTAGAGAGAGAATAGCGGAAAGAATTAGGGCCTTACAAGATCTGGTTCCAAGTGTCAATAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTAAAGGTTTTGAGCATGAGTCGATTGGGTGGAGCAGGTGCAGTGGCCCCACTGGTAACCGATATCCCATTATCATCAGTCGAGGAAGATGGCAGTGAGGGTGGAAGAAATCGGCCGGCTTGGGACAAGTGGTCGAATGACGGCACAGAAAAACAGGTCGCTAAGCTTATGGAAGAAAATGTTGGAGCTGCGATGCAATTGCTTCAATCAAAGGCGCTTTGCATCATGCCTATCTCACTGGCATCTGCGATATACCAGTCACAGCCACCGGACAGTTCTAGTATAGTCAAGCCTGAAACCAATCCACCTCCACAGACCTAG 885 0.522 MANNPSDAPAADDFLEQILSLQTFASADSGLTGPDISLTGTSPMMLQLNSSDANHHLAAGGSFHAPVYQLGLSLDQGKGGGFLKPEEASGSGERFRNDVVHGRPNNVFHGQPMHTTVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQDLVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEDGSEGGRNRPAWDKWSNDGTEKQVAKLMEENVGAAMQLLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPPQT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03920 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Vivi6g03920 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
Vivi6g03920 294 FunFam Basic helix-loop-helix transcription factor 131 193 - -
Vivi6g03920 294 Gene3D - 131 193 IPR036638 GO:0046983
Vivi6g03920 294 MobiDBLite consensus disorder prediction 108 140 - -
Vivi6g03920 294 SMART finulus 142 191 IPR011598 GO:0046983
Vivi6g03920 294 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 271 - -
Vivi6g03920 294 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03920 Vivi-Chr6 135471975 135475151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03920 63 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.723 5.65e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g03920 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03920 - - gmx:100797789 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03920 6 135471975 135475151 Vivi6g03920 6 135471975 135475151 ECH