Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03919 ATGGAAAGCTATATTGAAACAGATTTGATTATTAATCACAAGGACACCGAGTTAAGGTTGGGATTACCTGGAAACCATGATGAACAACATTCATGCAATATTGGATCGGTTGTTAGAAGCAACAAGAGATCATTTTCACAGAAAACAAGTGCTGAAGAGACTTCCATCTGCAATGCTTCTACTTCCTCAACCACAAGTGATCATGACCAAAGCAGTGTTCAACCTTCAAAGGTGCAAGTAGTTGGATGGCCACCAATTAGATCGTTTAGGAAGAACAGTTTACAACAAAAGAAAGTGGAAGATGGAAGTGGAATGTACGTGAAAGTGAGCATGGTTGGTACACCATACTTGAGAAAGATAAATCTCAAACTTTACAAAAGCTATTCAGAACTTCTAATAGCTTTGGAAAATTTGTTTAAGTGCACATTTGGTGAGCATTCAGGTGAACATGCTCCTACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGAACATGTTTATATACTCATGCAAAAGGCTGAAGATAGTGAAAAGATCATAG 558 0.3817 MESYIETDLIINHKDTELRLGLPGNHDEQHSCNIGSVVRSNKRSFSQKTSAEETSICNASTSSTTSDHDQSSVQPSKVQVVGWPPIRSFRKNSLQQKKVEDGSGMYVKVSMVGTPYLRKINLKLYKSYSELLIALENLFKCTFGEHSGEHAPTYEDKDGDWMLVGDVPWNMFIYSCKRLKIVKRS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03919 185 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 185 IPR003311 GO:0005634|GO:0006355
Vivi6g03919 185 MobiDBLite consensus disorder prediction 43 77 - -
Vivi6g03919 185 ProSiteProfiles PB1 domain profile. 104 185 IPR000270 GO:0005515
Vivi6g03919 185 Gene3D - 98 185 - -
Vivi6g03919 185 Pfam AUX/IAA family 147 185 IPR033389 -
Vivi6g03919 185 Pfam AUX/IAA family 16 142 IPR033389 -
Vivi6g03919 185 SUPERFAMILY CAD & PB1 domains 98 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03919 Vivi-Chr6 135457900 135459193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03919 92 181 B3 DNA Binding Superfamily AT2G46530 38.542 2.93e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi6g03919 AUX_IAA 6.5e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03919 K14484 - gmx:100792134 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03919 6 135457900 135459193 Vivi6g03919 6 135457900 135459193 ECH
Vivi6g03919 6 135457900 135459193 Vivi1g06674 1 154653575 154656012 PCT