Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03918 ATGGAATGCTATATTGAAACAGATTTGATTGTTAATCATAAGGATACCGAGTTAAGGTTGGGATTACCTGGAAACGATGATGAACAAGATAAACATTCATGCAATATTGGATCTGTTGTTAGAAGCAACAAGAGGTCTTTTTCACCAGAAACAAGTGTTGAAGAGTCTTCAATTAGCAATGCTTCTAGTTCCTCGACCACAAGTGATCATGATCAATGCACTGTTCAACAATCTTCAAAGGTGCAAATAGTTGGATGGCCACCAATTAGATCGTTTAGGAAGAACAGTTTACAACAAAAGAAAGTGGAAGATGGAAGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATCTTAATGCTTACAAAAGCTATTCAGAACTTCTCATAGCTTTGGAAAATTTGTTTAAGTGCACAATTGGTGAGCATTCAGGTGAACATGCTCCTACTTATGAGGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGAACATGTTCATATCCTCCTGCAAGAGGTTGAAGATAGTGAAAGGATCAGAGGCAAAGGGGTTGGCATGTCTATGA 591 0.3909 MECYIETDLIVNHKDTELRLGLPGNDDEQDKHSCNIGSVVRSNKRSFSPETSVEESSISNASSSSTTSDHDQCTVQQSSKVQIVGWPPIRSFRKNSLQQKKVEDGSGMYVKVSMAGAPYLRKIDLNAYKSYSELLIALENLFKCTIGEHSGEHAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLACL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03918 196 SUPERFAMILY CAD & PB1 domains 101 184 - -
Vivi6g03918 196 ProSiteProfiles PB1 domain profile. 107 192 IPR000270 GO:0005515
Vivi6g03918 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 191 IPR003311 GO:0005634|GO:0006355
Vivi6g03918 196 Gene3D - 101 196 - -
Vivi6g03918 196 MobiDBLite consensus disorder prediction 41 74 - -
Vivi6g03918 196 Pfam AUX/IAA family 16 149 IPR033389 -
Vivi6g03918 196 Pfam AUX/IAA family 150 194 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03918 Vivi-Chr6 135451125 135452551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03918 95 193 B3 DNA Binding Superfamily AT2G46530 36.190 1.09e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi6g03918 AUX_IAA 1.6e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03918 K14484 - gmx:100792134 255.373