Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03917 ATGGAAAGCTATATTGAAACAGATTTGATTGTTAATCACAAGGACACGGAGTTAAGGTTGGGATTACCTGGAAACGATGATGAACAAGACAAACATTCATGCAATATTGGATCTGTTGTTAGAAGCAACAAGAGATCATTTTCACAGGAAACAAGTGCTGAAGAGTCTTCCATCTGCAATGCTTCTAGTTCCTCAACTACAAGTGATCATGACCAAAGCACGGTACAACCTTCAAAGGTACAAGTAGTTGGATGGCCACCAATTAGATCGTTTAGGAAGAACAGTTTACAACAAAAGAAAGTGGAAGATGGAAGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATCTCAATGTTTACAAAAGCTATTCAGAACTTCTCATAGCTTTGGAAAATTTATTCAAGTGCACAATTGGTGGATATTCAGAAAGAGAAGGGTATAATGGATCTGAGCATGCTCCTACTTATGAAGATAAGGATGGTGATTGGATGTTGGTTGGAGATGTTCCATGGAACATGTTCATATCCTCCTGCAAGAGGTTGAAGATAGTGAAAGGATCAGAGGCAAAGGGGTTGTCATGTTTATGA 609 0.3924 MESYIETDLIVNHKDTELRLGLPGNDDEQDKHSCNIGSVVRSNKRSFSQETSAEESSICNASSSSTTSDHDQSTVQPSKVQVVGWPPIRSFRKNSLQQKKVEDGSGMYVKVSMAGAPYLRKIDLNVYKSYSELLIALENLFKCTIGGYSEREGYNGSEHAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLSCL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03917 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 197 IPR003311 GO:0005634|GO:0006355
Vivi6g03917 202 Gene3D - 100 202 - -
Vivi6g03917 202 Pfam AUX/IAA family 16 200 IPR033389 -
Vivi6g03917 202 SUPERFAMILY CAD & PB1 domains 100 190 - -
Vivi6g03917 202 FunFam Auxin-responsive protein 101 202 - -
Vivi6g03917 202 MobiDBLite consensus disorder prediction 45 79 - -
Vivi6g03917 202 ProSiteProfiles PB1 domain profile. 106 198 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03917 Vivi-Chr6 135400042 135401520 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03917 94 199 B3 DNA Binding Superfamily AT2G46530 34.906 1.49e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi6g03917 AUX_IAA 6.7e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03917 K14484 - gmx:100792134 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03917 6 135400042 135401520 Vivi6g03917 6 135400042 135401520 ECH