Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03915 ATGGAGGTTGTTGGCATGAAGAAGGAGAATATGAGATTTGAAGAAACTGAGCTCAGACTTGGAATTGGATCAGCCATAGTTTCTGAAGAAGTTGTAAGGAAGAGAGGCTTTTCTGAGACTGAAACTGATCATGATGATGATGAGAAAACTACTATGGATTTGATGCTTAATCTTTCCTCTAAGGAAGCTAGTGCTGAGATAGATCCAAATCATAAGAGCACCAAGACTTTGCCAAAAGAGAAGACTCTTTTGCTTGCCGATCCTGCAAAGCCTCCTACAAAGACGCAAGTGGTAGGTTGGCCACCAGTGCGGTCGTTCAGGAAGAACATATTAGCAACACAAAAGAGTCAAGAAACTGGCAGTCCAAATGCCATTGCAATCAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTAGACTTGAAGATGTACAAAAACTACTCACAACTTTCTGATTCCTTAGGCAAAATGTTCAGCTCCTTCACCATTGGAAACTGTGAATCTCAAGGAATGAAGGATTTTATGAATGAGAGTAAGTTGATGGATCTTCTAAACAACTCTGATTATGTCCCAACCTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTTCCATGGGAGATGTTTGTTGAATCATGCAAACGTCTGCGTATCATGAAAGGAAAGGAGGCTATTGGTATTGCACCAAGAGCTATGGAGAAATGCAAAAACAGGAGCTAG 738 0.4173 MEVVGMKKENMRFEETELRLGIGSAIVSEEVVRKRGFSETETDHDDDEKTTMDLMLNLSSKEASAEIDPNHKSTKTLPKEKTLLLADPAKPPTKTQVVGWPPVRSFRKNILATQKSQETGSPNAIAISFVKVSMDGAPYLRKVDLKMYKNYSQLSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNNSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGIAPRAMEKCKNRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03915 245 SUPERFAMILY CAD & PB1 domains 129 226 - -
Vivi6g03915 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 231 IPR003311 GO:0005634|GO:0006355
Vivi6g03915 245 Pfam AUX/IAA family 15 236 IPR033389 -
Vivi6g03915 245 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Vivi6g03915 245 FunFam Auxin-responsive protein 123 237 - -
Vivi6g03915 245 Gene3D - 123 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03915 Vivi-Chr6 135342043 135351920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03915 111 230 B3 DNA Binding Superfamily AT3G61830 31.667 1.95e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi6g03915 AUX_IAA 3.4e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03915 K14484 - gmx:100810013 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03915 6 135342043 135351920 Vivi6g03915 6 135342043 135351920 ECH
Vivi6g03915 6 135342043 135351920 Vivi1g06504 1 147853726 147854960 PCT