Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03903 ATGACGAATCAAGTTGTGCGAGTCAAGAGAGCGACGATTGCAGCATGCATGACTTGCCCACTCTGTAACAAGCTATTCAAACAAGCTACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGACAAAATTACTGATGAAGATTTGGAATGCTGTCCAGAATGCAACATTGATTTGGGCTGTGTTCCACTTGAGAAACTAAGGCCGGACCATACTAAGCAAGATGTAAGGGCCAAAATTTTCCCGTTAAAGGGAAGAAAAGTGAAAGAACCTGAAGTTGTCGCGGCTTCAGTACCATTGCCAGCTAAGAGAAAAGAGAGATCTCTTTCATCTTTGGTGGTCAACACACCAAGGGTATCGGCACAATCAACCATGACAGGAAGAAGAACGAAACCTACAAGAAAGGCTAGCAGTCTGCAGTCCTCTAGTTTTTCATTTGAAAAGCCGATTAAGAAAGAGGAAGCATTATTGGACGACCGTCTCGGGAGTTCAAGCTCACCTGAAACTTCAAATAAGTTGCGCCAGAGCAATGGACAGAGTGAGGGTAGTCAATCCACGCCAAATAAAGAAACAGAGAATGGTGCTGAAACATATGATGCAAAGTTGGATCTTTGGAAACCGCTGAATTGTTTAGTGGAGGTCGCAAGCAGGACTAAATCTTTCAAGTCTAATACACAAGGTTCCACTGCTAAACTTGAACCCATTCAAGTAAATGAAAGTGAGTCTCAAGTGCAAAAAATCAAAAATAAGGAAAATAAACGCAAGGCAAAAGCTGAGGGTGAAAAAATTAGCCCTTTTCCAGTTTCTTCAGACACAGCAAAACCCAATAAATTGCGCAGAGTACGCAGGAAAAAGGAAACTTTTGGAGAATCTGGCATATCACCCCAAGCTGTGGTGGATTCTACCAGCAATAAACTCTTTATGAGCGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGAAGGAGATGCACCCTTGCCACAAATTCCTGCAAGCTATCTGAGAATAAAGGATGGAAGCGTACCTGTCTCGTTCATCCAAAAATACCTAATGAAGAAACTAGATCTGACGAGTGAAACTGAGATTGAAATTAAATGTATGGGACAACCAGTGCTCCCTACACTGAAACTACATAGTTTGGTTGAATTGTGGCTGGATTCTACAGCATCCGCATCAGACCGAATTCCAGCGATTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTTCTAGCCTATGCTCGGAAGACTCCACACCCTTGA 1278 0.4249 MTNQVVRVKRATIAACMTCPLCNKLFKQATTISECLHTFCRKCIYDKITDEDLECCPECNIDLGCVPLEKLRPDHTKQDVRAKIFPLKGRKVKEPEVVAASVPLPAKRKERSLSSLVVNTPRVSAQSTMTGRRTKPTRKASSLQSSSFSFEKPIKKEEALLDDRLGSSSSPETSNKLRQSNGQSEGSQSTPNKETENGAETYDAKLDLWKPLNCLVEVASRTKSFKSNTQGSTAKLEPIQVNESESQVQKIKNKENKRKAKAEGEKISPFPVSSDTAKPNKLRRVRRKKETFGESGISPQAVVDSTSNKLFMSGPIWFSLVASENQEGDAPLPQIPASYLRIKDGSVPVSFIQKYLMKKLDLTSETEIEIKCMGQPVLPTLKLHSLVELWLDSTASASDRIPAIIGSSAKDFVMVLAYARKTPHP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03903 425 MobiDBLite consensus disorder prediction 223 247 - -
Vivi6g03903 425 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 422 IPR044807 GO:0004842
Vivi6g03903 425 MobiDBLite consensus disorder prediction 223 277 - -
Vivi6g03903 425 MobiDBLite consensus disorder prediction 166 197 - -
Vivi6g03903 425 SUPERFAMILY RING/U-box 15 78 - -
Vivi6g03903 425 MobiDBLite consensus disorder prediction 113 149 - -
Vivi6g03903 425 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Vivi6g03903 425 MobiDBLite consensus disorder prediction 162 197 - -
Vivi6g03903 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 113 IPR013083 -
Vivi6g03903 425 SMART ring_2 19 59 IPR001841 -
Vivi6g03903 425 CDD RING-HC_PCGF 17 60 - -
Vivi6g03903 425 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vivi6g03903 425 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 IPR018957 GO:0046872
Vivi6g03903 425 MobiDBLite consensus disorder prediction 248 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03903 Vivi-Chr6 135146060 135150670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03903 3 343 C3H Transcription Factor Family AT2G30580 52.161 1.11e-102 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03903 K16277 - gmx:100815540 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03903 6 135146060 135150670 Vivi6g03903 6 135146060 135150670 ECH