Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03894 ATGCACCCTCACTCCCTCCCTCTCCCGACGGATTCTCCAGCGCCGTCGTCCAAACCCTCATCCTCCAAAAACTCCCATTTCCGAGGCGTCCGGAAGCGTCCATGGGGCCGCTTCGCCGCCGAGATCCGTGATCCATGGAAAAAGACCCGCAAATGGCTAGGCACTTTCGACACCGCAGAAGAAGCCGCCAGAGCCTACGACGATGCCGCCAGAGCCCTCCGTGGAGCCAAAGCCAAGACCAACTTCCCCTACTTTGTAACTCCTACAATTCTTCCGATCCCTCCTCCAACCTTCGACGGTGGAAATGGGAGACATGTCGCGTTTTGGGGTCCTCCGGTTTGTTTCACGGCGGGTGCTCCGGTGAGGTCGGAGTACAAAGGTTATAAGCTGGAGAATATTGTGGCGAGTAAGGGGAAGGAGGAGGAGAAGAAGAAGCCGTTTTTGTTTGACCTTAACTTGCCGGCACCGCTTGTTTGA 477 0.5639 MHPHSLPLPTDSPAPSSKPSSSKNSHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARALRGAKAKTNFPYFVTPTILPIPPPTFDGGNGRHVAFWGPPVCFTAGAPVRSEYKGYKLENIVASKGKEEEKKKPFLFDLNLPAPLV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03894 158 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Vivi6g03894 158 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vivi6g03894 158 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Vivi6g03894 158 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vivi6g03894 158 Coils Coil 59 79 - -
Vivi6g03894 158 MobiDBLite consensus disorder prediction 1 32 - -
Vivi6g03894 158 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Vivi6g03894 158 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Vivi6g03894 158 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 120 - -
Vivi6g03894 158 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Vivi6g03894 158 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Vivi6g03894 158 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03894 Vivi-Chr6 135025867 135026598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03894 20 94 AP2-EREBP Transcription Factor Family AT3G15210 70.667 2.13e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03894 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03894 K09286 - mnt:21389211 173.711