Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03892 ATGGCGTCTGAAGAGCCCACCACCGTCGCAGTCGAGCAGCCCATCGTGGAGGAGCCGGCCGCCGCCGACACACTCCCACCAGTTGTCAATGAAGCTGAAGAGCCCACTGCTAAGCCCAAGAAGGCTCCCAAAGAGCCCAAGGCCAAGAAAGCTCCGGCCAAACCCAAAACTCACCCAACCTATGAAGAGATGGTGAAGGAAGCGATTGTTGCTTTGAAGGAGAGGAACGGTTCGAGCCAGTACGCGATTGCGAAGTTCATCGAAGAGAAGTACAAGCAGCTTCCTTCGAGCTTCAAGAAGATTTTGTTGGTTCAGCTCAGGAAGCTTGTTGCTTCTGACAAGCTCGTGAAGGTGAAAGCATCTTACAAACTACCAGCGAAATCCTCTACTCCAAAGCCCGCCAAGAAGCCTGCTGCTGCAAAACCCAAAGCCAAGCCCAAGGCTAAGCCAGCTGCCAAGTCAAAGGCTAAGCCCGCCGCAAAAGCCAAGCCAGCTGCCAAAGCCAAGCCTGCCGCAAAAGCCAAGCCAGCTGCCAAAGCCAAGCCAGCTGTCAAACCCAAGCCAGCTGCAAAAGCCAAGCCCGCAGCTAAGGCTAAGCCAGTTGCCAAAGCTAAACCCGCTGCCAAGGCGAAGCCAGCTGCTAAGCCCAAACCTGCTGCTAAAGCGAAGCCGGCTGCCAAGGCTAAGCCAGCTGCTAAGGCTAAGCCGGCTGCCAAGCCTGCTGCTAAGGCTGCAAGGACTTCAACGAGGACTACTCCTGGGAGAGCTGCTGCACCTAAGCCTGCGGCGAAGAAGGCTGCACCAGTGAAGAAGGCTCCGGTGAAAGCAGCGGCAAAGGCAAAGACTCCGGTGAAGAAGGCAGCGGCTAAGAGAGGAGGGAGGAAGTGA 888 0.5631 MASEEPTTVAVEQPIVEEPAAADTLPPVVNEAEEPTAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKYKQLPSSFKKILLVQLRKLVASDKLVKVKASYKLPAKSSTPKPAKKPAAAKPKAKPKAKPAAKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAVKPKPAAKAKPAAKAKPVAKAKPAAKAKPAAKPKPAAKAKPAAKAKPAAKAKPAAKPAAKAARTSTRTTPGRAAAPKPAAKKAAPVKKAPVKAAAKAKTPVKKAAAKRGGRK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03892 295 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi6g03892 295 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi6g03892 295 PRINTS Histone H5 signature 153 167 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi6g03892 295 PRINTS Histone H5 signature 214 233 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi6g03892 295 SUPERFAMILY "Winged helix" DNA-binding domain 54 137 IPR036390 -
Vivi6g03892 295 MobiDBLite consensus disorder prediction 120 295 - -
Vivi6g03892 295 MobiDBLite consensus disorder prediction 34 61 - -
Vivi6g03892 295 Pfam linker histone H1 and H5 family 58 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi6g03892 295 CDD H15 57 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi6g03892 295 MobiDBLite consensus disorder prediction 1 61 - -
Vivi6g03892 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi6g03892 295 PANTHER HISTONE H1 33 275 - -
Vivi6g03892 295 Gene3D - 53 138 IPR036388 -
Vivi6g03892 295 MobiDBLite consensus disorder prediction 138 162 - -
Vivi6g03892 295 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03892 Vivi-Chr6 134911489 134912774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03892 59 133 Single Myb Histone (SMH) Gene Family AT1G72740 40.506 7.75e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03892 K11275 - tpra:123889087 152.91