Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03889 ATGGCGGGTGGGAGGTTTTGTAAGGATGAAGAAGACAAGGCTATGTTGGAATCTGTATTGGGAACTGATGCTGTTGGGTTTTTTAGTACAGCGGTTTCTAAACATGTTTTTTCCGATGTTATTGTTCCGCCTAATATGGATACGGGTATTCATCAAAGGCTGTGTCATATTGTTAAGGGTTCTAGGTGGAATTATGTGATTTTGTGGCAGGTTGCGGGTTTGAAATCGGGTGGGTATGTGTTGAAATATGGGGAGGGGCATTGTCAGGATCCGGTTGGGGGTCCGAGGAGTGAGCAGGAAAGGGAGAGAGATGAGGTTAGGAGGAGGGTGTTGGGGAAGATTCATGCTTCCTGGGGTGGATCTAATTCGATTGAGAATGTTTATAAGAAATTGGATGAAGTTTCGGATTTGTATATGCTTTACTTGACTTCGGTTTATTATGTGTTTGGTTTTAATTCTCAGTATGGTCCTGGGAGTTCTTTTAAGTGTAGTAAGCCGACTTGGTCTTCGGATGCGGGTAGTTGTTTGAAGCAGTATGAATCGAGGTCGTTTTTGGCTAAATCGGCGGGTTTTCAAACTGTTGCTTTTGTGCCTCTTAAGGCTGGGGTTGTTGAGCTTGGTTCTATGGAGATGGTGCCGGAAGAGCAGGGCTTTTTGGATATGGTCCGGGCGACGTTTGGAGAATCTAGTTCTGGATTGGCTAAGGCGGTACCGAAGATTTTTGGGCGTGAGTTGAGCTTAGGGGGGGATGCGAAATCTCAGTCCATTACTATTAGTTTCTCCCCGAAGGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTACGAAGTGCAGGCGCTTGGGCCGAATCATGCTTATGGTAATTCTTCGAATGGCGGTGTAGGAGAGATTAATGAGGCAAAAATGTACCCTCAGTTAGGTCAAATGGTTCCTGGGAATTTCACTTCTCAAGCAAGGGTATCTTCTATAGATTTGGTTAATGAAGAGTCATCCTCGCCTCTTGGAGACGAGCGGAAGCCTAGAAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCGCTGAATCACGTTGAAGCGGAGAGGCAAAGACGGGAGAAGCTTAACCAGAGATTTTACGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAGGCCTCTCTACTTGGCGATGCTATCACCCATATCACTGATCTCCAGAAGAAGATCAAGCTTTTGGAAACTGAGAAAAACATGGCTAAGGGCTCACAGTTGCCATTGCAAGATATCGATTTTCAGGCTAGACAGGACGATGCAGTTGTGAGAGTGAGTTGCCCTTTGGATATTCACCCGGTTTCTGGAATCGTTAAAGTGTTGAGAGAACATCAAATTGCAGCTCAAGAGGCAAATGTTTCAACTGCACAGGATAAGGTAATTCATACTTTCTCCATCAGAACCCAAGGAGGGGAAGCAGCTGCGATACAGTTGAAAGAAAAGCTTGAAGCATCTTTATCCAAAAGTTTGTGA 1512 0.4497 MAGGRFCKDEEDKAMLESVLGTDAVGFFSTAVSKHVFSDVIVPPNMDTGIHQRLCHIVKGSRWNYVILWQVAGLKSGGYVLKYGEGHCQDPVGGPRSEQERERDEVRRRVLGKIHASWGGSNSIENVYKKLDEVSDLYMLYLTSVYYVFGFNSQYGPGSSFKCSKPTWSSDAGSCLKQYESRSFLAKSAGFQTVAFVPLKAGVVELGSMEMVPEEQGFLDMVRATFGESSSGLAKAVPKIFGRELSLGGDAKSQSITISFSPKVEDDSGFTSDSYEVQALGPNHAYGNSSNGGVGEINEAKMYPQLGQMVPGNFTSQARVSSIDLVNEESSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKNMAKGSQLPLQDIDFQARQDDAVVRVSCPLDIHPVSGIVKVLREHQIAAQEANVSTAQDKVIHTFSIRTQGGEAAAIQLKEKLEASLSKSL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03889 503 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Vivi6g03889 503 Gene3D - 345 417 IPR036638 GO:0046983
Vivi6g03889 503 MobiDBLite consensus disorder prediction 324 363 - -
Vivi6g03889 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Vivi6g03889 503 MobiDBLite consensus disorder prediction 331 363 - -
Vivi6g03889 503 FunFam Transcription factor bHLH13 345 419 - -
Vivi6g03889 503 PANTHER MYC 44 498 IPR045084 GO:0003700|GO:0006355
Vivi6g03889 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
Vivi6g03889 503 Coils Coil 398 418 - -
Vivi6g03889 503 CDD bHLH_AtAIB_like 349 426 - -
Vivi6g03889 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 226 IPR025610 -
Vivi6g03889 503 SMART finulus 358 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03889 Vivi-Chr6 134886215 134888132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03889 3 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.617 2.80e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g03889 bHLH-MYC_N 4.4e-36 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03889 - - gmx:100819968 672.159