Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03883 ATGGCTTCTTCAAATGGAACTAGCTCCGGAACCGGTTCTCCTTGTGGAGCATGCAAATTCCTAAGAAGAAAATGCGCACCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTTGCAGCCATTCATAAAGTTTTTGGTGCCAGCAATGTTTCTAAGCTGCTTTTGCATATTCCAGCTCATGAACGTTGTGAAGCTGTTGTCACAATCGCTTATGAAGCTCAAGCTCGTATTAGAGATCCTGTCTATGGCTGTGTCTCTCACATTTTTGCTTTACAACAACAGGTAGCATGCTTGCAGACACAACTGATTCAAGTGAAATCTCAGCTGTCACAAAACATAGAGAATAGCAATAATAATAATAATAATCAATGGAGAGGGAATAATGATAATGTTGTTGGAACACAACAAATGAATTATCATCCTTTTTGTCCAACTTACATGAACCCTATATCTCCTCAAAGCTCACTTGAGTCATCAATTGATCATAGTGGAAGCATGAATGATGGGATGATGAACATGCAAGATGTACAAAGTACTAGTAGAGAGGATTTCTCATTCCAAGTTTGTAATAGTTCTAAGAAAAGAATGTTGTATAACAATAATAATAGTCATGACTTGGGTGAGTTGCAAGAATTGGCTCTTAGGATGATGAGGAACTAA 678 0.382 MASSNGTSSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQTQLIQVKSQLSQNIENSNNNNNNQWRGNNDNVVGTQQMNYHPFCPTYMNPISPQSSLESSIDHSGSMNDGMMNMQDVQSTSREDFSFQVCNSSKKRMLYNNNNSHDLGELQELALRMMRN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03883 225 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Vivi6g03883 225 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Vivi6g03883 225 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03883 Vivi-Chr6 134767933 134769663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03883 1 225 AS2 family AT2G42430 54.251 1.36e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi6g03883 LOB 4.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03883 K13944 - gmx:100801508 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03883 6 134767933 134769663 Vivi6g03883 6 134767933 134769663 ECH
Vivi6g03883 6 134767933 134769663 Vivi1g06629 1 153227413 153228292 PCT