Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03882 ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCTTGTAAATTCTTGAGGAGAAAATGCATTAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACTCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGTAATGTTTCAAAACTTCTTGCACACCTCCCTGTGACTGATCGCTGTGAAGCTGCTGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGATGTGTTTCTCATATTTTTGCACTTCAACAACAGGTGGTAAATTTACAAGCACAACTAGCTTATATGAGAGAACAAGCAGCTCAAAGGTGTCTCAATACTTCATTCTCTGAAAACCCTAATGAGAAAAACTTTGTAAAACCTAGTACTATTCTCCCTCAAGATTTTCAAAGTTGGTTCCAAATGGAAAATGATTCCAACATGAGTCCTCAATTTGATCCCAACTTGTCCTCCTCCACTACTAATCTCTCAACAACACCACAATATTATAATGGGAATGCAACCACTCTCATGGACCTAAACCCTATAATGGGAAACTATGAAAATTCAGGAACTTTAGAAGAAAGCATCTCATCATTTTGTAACTTTGAAGAGAGATGTAATAACTCAATGTCCTGTCATGACATGCAAAGGCAGTGGGCCTTTCATGAAATGAATAATTTTCAGTAA 696 0.3779 MMTGSGSPCGACKFLRRKCIRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYMREQAAQRCLNTSFSENPNEKNFVKPSTILPQDFQSWFQMENDSNMSPQFDPNLSSSTTNLSTTPQYYNGNATTLMDLNPIMGNYENSGTLEESISSFCNFEERCNNSMSCHDMQRQWAFHEMNNFQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03882 231 Coils Coil 88 108 - -
Vivi6g03882 231 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Vivi6g03882 231 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Vivi6g03882 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03882 Vivi-Chr6 134753806 134755183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03882 8 202 AS2 family AT3G58190 55.941 4.57e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi6g03882 LOB 1.8e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03882 6 134753806 134755183 Vivi6g03882 6 134753806 134755183 ECH
Vivi6g03882 6 134753806 134755183 Vivi1g06627 1 152991318 152992395 PCT