Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03880 ATGGGTAGCAATTTGCATCAACTACTCAGAAGTCTTTGTTTCAATACTCATTGGAATTATGCTATATTTTGGAAGCTCAAGCATTGTGCTCCAAATCCAATGATCTTAACATTGGAGGATGCTTACTGTGACAATTCGGATTATTTTGACGCTTCAGAAAATAAGACCTTGGAACAGATTAAGGGTGGGAAATTTTCACATGAAGCTTTGGGGTTAGCTGTGGCAAAAATGTCGTATAATGTTTACTCATTAGGGGAAGGTGTTGTTGGACAGGTAGCTGTTACTGGAAAACATCGGTGGATCTGTGCAGATGATCAAGTTACAAGTTCTGACTTGTCTTTTGAGTTTACTGATTTGTGGCAAACACAGTTTTCTGCTGGAATTAGGACAATTGTTGTTGTGTCTGTAGTCCCACTCGGCGTTGTTCAGCTTGGATCTCTAATAAAAGTGAATGAAGATATGGGAGTTATTAATCATATAAGAAACCTTTTTTTGTTTACTCAAGATTACTCAATAGACCACATTCCTAGTCAAATACAACATAGTTTGAAGAGCTCTTCATCTCATCAGGATATTTTGATGGAAAAATCATCTTCAGATATTATGCCTGCATGCATGACGAATGAAACAGTGGATGTTTTGATGCCCCTTCAATGTTCTGGGAGGAACAGTGCAACTAATTCTGCTTATTGGGAAATGGGTGATGATGTGATCAAGCACGAAATACCCGAGCTCAATAGTGATGTGAGTCCCATTTTGCTTCAGTCGACGTTTGATATGATTAACGTGAAGCATCAGGAATTTGGAGAGATAAGGCCTCTAAGTGCGAGGGAGTGTGCAGGGGGCAGTGATGGCCACAAAAATATGAGATTAGAATCGGAACAAAATTTATCATCATTTTTGAACAATTCTCTTATAAATAATGATGGCGTCAGCGATTTGATACACCATTCAGAAAAGTCCAGAGTTGATTCTGCATGCTTTCCTACAGATTTTCTAGAAGCATATGTTTCAGAAAGTGACAAATCTCATAAACACTGCAAAAAGTCAGAGTTTTGGACTGTGCCTTGTGGCAAGGATACCTCCTATACACAGTTGAGTTTTCCGGCTGGCTGTGAACTACACGAAGCACTTGGACCAGCATCTTTGAAAGGGAGCAAATATTTGGATTCGCTGGCACAGGTTAATCAAGATGTGAAAATTATGGATATGCCAGACACAGTTAACACTAGTCAATCAACTCCAGAGCATCTTTTGGAAGCAATGGTGGCCAATATTTGTCACAGTAGTAATAATGATGTTAATAGTGAATCATCATTTTATAGATCAAAGCAATCTGCAATAAGTTCTGGCAAAAAACCTGAAGTTTCTATTCAAAATGTGACTGTTAATCCAGAAAGCTATTCAATAGATCATCCTTCTCTTTTCAGAGAGGAAAAACACCATTGTTTGAGCTCATCGTCAGGGGTATGTGGTGTTATGTCATCTCAAGGCATTTCATCTCTATGTCCTAGTGCTTGTAGTGAACAACTCGAAAGGTCATCTGAACCATCTAAGAACATCAAAAAGAGAGCTAGACCTGGAGAAAGTTGCAGACCTCGGCCAAGAGACAGGCAACTGATCCAAGATCGAATTAAGGAGCTGAGAGAGTTGGTTCCAAATGGTGCAAAGTGCAGTATTGATTCACTACTGGAGCGCTCGATAAAGCACATGCTCTTTCTGCAAAGCATAACTAAGCATGCTGACAAGCTAACAAAATTCGCTGATTCTAAATCAAAGTTGCATCATGTGGAAGCAGACATTCTTGGATCCTCTAGTAGTGAGCAGGGTTCAAGTTGGGCAATGGAGGTAGGGGGTCATCTAAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAACGGACAGATGCTTGTTGAGATGCTATGTGAAGAATGGAGCCATTTTCTTGAAATAGCGGAAGCCATAAGAAGCTTAGGCCTTACAATTGTGAAGGGTGCAACAAAAACTCGCGATGACAAGATGTTAATATGCTTTATTGTTGAGGTTGAAAACAACAAAAATGTACACCGATTGGACATCTTGTGGCCGCTTGTTCAGATACTGCAATCCAAGAGCACTGCAGCAACAGTAACTGGTTGA 2142 0.3978 MGSNLHQLLRSLCFNTHWNYAIFWKLKHCAPNPMILTLEDAYCDNSDYFDASENKTLEQIKGGKFSHEALGLAVAKMSYNVYSLGEGVVGQVAVTGKHRWICADDQVTSSDLSFEFTDLWQTQFSAGIRTIVVVSVVPLGVVQLGSLIKVNEDMGVINHIRNLFLFTQDYSIDHIPSQIQHSLKSSSSHQDILMEKSSSDIMPACMTNETVDVLMPLQCSGRNSATNSAYWEMGDDVIKHEIPELNSDVSPILLQSTFDMINVKHQEFGEIRPLSARECAGGSDGHKNMRLESEQNLSSFLNNSLINNDGVSDLIHHSEKSRVDSACFPTDFLEAYVSESDKSHKHCKKSEFWTVPCGKDTSYTQLSFPAGCELHEALGPASLKGSKYLDSLAQVNQDVKIMDMPDTVNTSQSTPEHLLEAMVANICHSSNNDVNSESSFYRSKQSAISSGKKPEVSIQNVTVNPESYSIDHPSLFREEKHHCLSSSSGVCGVMSSQGISSLCPSACSEQLERSSEPSKNIKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERSIKHMLFLQSITKHADKLTKFADSKSKLHHVEADILGSSSSEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEEWSHFLEIAEAIRSLGLTIVKGATKTRDDKMLICFIVEVENNKNVHRLDILWPLVQILQSKSTAATVTG 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03880 713 MobiDBLite consensus disorder prediction 515 537 - -
Vivi6g03880 713 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 164 IPR025610 -
Vivi6g03880 713 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 525 574 IPR011598 GO:0046983
Vivi6g03880 713 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 708 IPR043561 GO:0003700|GO:0006355
Vivi6g03880 713 MobiDBLite consensus disorder prediction 513 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03880 Vivi-Chr6 134696339 134701883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03880 1 706 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 39.765 8.69e-147 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03880 - - mtr:25499239 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03880 6 134696339 134701883 Vivi6g03880 6 134696339 134701883 ECH
Vivi6g03880 6 134696339 134701883 Vivi1g06620 1 152755513 152760120 PCT