Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03876 ATGTCACAATCTTCTTGGCCTATAGTTGCAATTGTTGTGCTAAGCATCTTAGCCATTGTTTTCATATTCATCGGTTACTTGATTCTTGTGACCAAATGTTACTCTAACTGGTGGCATCCATTGAGATGGATATCAATCCTACCACCTTCACAGAATGAAGAGCCCTTCATAGCGTTCTCTCCGAGGACATGGAACCGCGGTGTTGACGAATCCGTCATCCAAGAAATCCCAACGTTTCAGTTCACGAAAGGAGAAGGCGGTGATGATCGTCGAAGTGTCAAAGGTTGTGTGGTTTGTTTGAATTCTTTTCAAGAACAAGATATGCTGAAAGTACTTCCGAATTGCAGCCACCACTTTCACTTGGATTGTATTAACATTTGGCTTCAAACAAATGCTAATTGTCCTCTTTGTAGAACAAGCATTTCGGGCAACACGCAGTTTCCGACGAACCGTAACATAGCAGCACCGAGTTCTTCACCGCAGGATTCTCAGTTATTCTCTAACATGGGTAGTGATGAAGATTTTGTGGTGATTGAATTATGGGGCGAAGGAGAGCATAGAGGAACAATGTCTCATATGCAGCAAGAAAGAAATGAGTCAAGGGAAATCATAGCATCAGTGAGTAGAACTCACTCTACAGCTAGAAACACGAAGGAGGAGAAGGTGGTGGAGCTGAAACCATGGAAGTGTCACAGTGTTTCCATCATGGGTGATGAGTGCATTGATGTCCGAAAAAAAGATGAGCATTTCTCTATTCAGCCAATTAGACGATCTTTCTCATTGGATTCTGCAAGTGATAGAAAAGCTTACTTGGAAGTTCAAGACATCATCCGACAGAATAGTCGGCATCGTCAAAATGGAGATTGTGACAGTGAAGATTGTAATAGTAGCAAGGGTAGAAGATCATTCTTTCCATTTCGTTATGGTAGGGGATCAAAAACTTCATTGCTTGCTAGAGAGAACAGAGTATAA 972 0.4187 MSQSSWPIVAIVVLSILAIVFIFIGYLILVTKCYSNWWHPLRWISILPPSQNEEPFIAFSPRTWNRGVDESVIQEIPTFQFTKGEGGDDRRSVKGCVVCLNSFQEQDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNTQFPTNRNIAAPSSSPQDSQLFSNMGSDEDFVVIELWGEGEHRGTMSHMQQERNESREIIASVSRTHSTARNTKEEKVVELKPWKCHSVSIMGDECIDVRKKDEHFSIQPIRRSFSLDSASDRKAYLEVQDIIRQNSRHRQNGDCDSEDCNSSKGRRSFFPFRYGRGSKTSLLARENRV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03876 323 SMART ring_2 96 137 IPR001841 -
Vivi6g03876 323 Pfam Ring finger domain 96 138 IPR001841 -
Vivi6g03876 323 SUPERFAMILY RING/U-box 73 145 - -
Vivi6g03876 323 PANTHER RING-H2 FINGER PROTEIN ATL16 3 317 IPR044600 GO:0016567|GO:0016740
Vivi6g03876 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
Vivi6g03876 323 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03876 Vivi-Chr6 134653588 134654837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03876 2 283 C3H Transcription Factor Family AT1G04360 42.857 2.11e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03876 K19041 - psat:127126067 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03876 6 134653588 134654837 Vivi6g03876 6 134653588 134654837 ECH
Vivi1g06615 1 152572782 152574213 Vivi6g03876 6 134653588 134654837 PCT