Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03875 ATGGAAGATGAAGTAAAGAAAGGTGAAGTACCAAAGCAAATAAAGTATAGAGGAGTAAGAATAAGGCCATGGGGAAAATTTGCAGCAGAGATTCGAGATTCGACTAGGCATGGTGCTCGAGTTTGGCTCGGTACATTTAACACGGCTAAGGAAGCGGCAAGAGCTTATGATCGCGCTGCATTCGATATGAGAGGTTCTTCGGCTATTCTCAACTTTCCTCATGAACATTTACCATGCCATGTAGCTTGTAATCCCTCTAAGCCCTCTTCTTTACCCTCCTCCTCGAGTTCAAACTCGTCGTCGTCATCATTATCTTCAAAAGTTAAATCAAAAGATGGAGAAGAAGTCATAGAGTTTGAGTATCTAGATGAAAAATTGTTAGAGGAACTCTTGGATTGTGAGAATACCATCAATCATAACTGGTTCAACTAG 432 0.4097 MEDEVKKGEVPKQIKYRGVRIRPWGKFAAEIRDSTRHGARVWLGTFNTAKEAARAYDRAAFDMRGSSAILNFPHEHLPCHVACNPSKPSSLPSSSSSNSSSSSLSSKVKSKDGEEVIEFEYLDEKLLEELLDCENTINHNWFN 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03875 143 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Vivi6g03875 143 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Vivi6g03875 143 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Vivi6g03875 143 SUPERFAMILY DNA-binding domain 15 75 IPR016177 GO:0003677
Vivi6g03875 143 PANTHER DNA-BINDING DOMAIN 10 132 IPR044808 GO:0003700|GO:0009873
Vivi6g03875 143 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Vivi6g03875 143 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Vivi6g03875 143 MobiDBLite consensus disorder prediction 86 107 - -
Vivi6g03875 143 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Vivi6g03875 143 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Vivi6g03875 143 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Vivi6g03875 143 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03875 Vivi-Chr6 134650899 134651381 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03875 12 134 AP2-EREBP Transcription Factor Family AT3G23230 62.602 9.40e-43 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03875 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03875 - - cam:101512924 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03875 6 134650899 134651381 Vivi6g03875 6 134650899 134651381 ECH
Vivi1g06598 1 152300892 152301284 Vivi6g03875 6 134650899 134651381 PCT