Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03872 ATGGACTTTTACGGTTCCGCAAATTTATTTGATATTTCATGGGAAGATTTGTTTATGTTCGATAATTTTGATTCCAATTCTTCATCCTCTAGTGGTGATCATATGGATTTACAAGAATTCAAATCCAATATTAGAGAAGAAAATTCACCACCACCACCACCACCACAAACCCTAACTCAACAACAACCATCACTTCCCTCAAAAACCCTAACTAAACAACCACCATCATGTAAACGAGAGAAGAGGCTTTATAGAGGAGTGAGGACAAGACCATGGGGAAAATATGCAGCAGAGATAAGAGACACAACACGAAACGGTGTTCGGGTATGGATCGGAACATTCGATACACCTGAAGCAGCTGCTTTGGCTTATGATCAAGCAGCTTTCTTAACAAGAGGATATAGGGCAATCCTTAACTTCTCAGAACATGTTGTGAAGGAGTCTCTTCAAAACATGAATTTCAAGACATTGTTAAACCGAGGTTGTTCGCCTTTGTTGGAGCTAAAAAAGATGCATGTTTTGAGAACAAGATCTACTAAGACTTGTAGTAAAAAGGGTAAGAAGGTTTCAAAGAATGGAGGGTTGAATATGAATGTTGCTGAAAATGTTTTGGTGTTGGAAGATATGGGGTCTGAGTATCTAGAGCAACTTTTGATGAGCACCATTTGA 669 0.3871 MDFYGSANLFDISWEDLFMFDNFDSNSSSSSGDHMDLQEFKSNIREENSPPPPPPQTLTQQQPSLPSKTLTKQPPSCKREKRLYRGVRTRPWGKYAAEIRDTTRNGVRVWIGTFDTPEAAALAYDQAAFLTRGYRAILNFSEHVVKESLQNMNFKTLLNRGCSPLLELKKMHVLRTRSTKTCSKKGKKVSKNGGLNMNVAENVLVLEDMGSEYLEQLLMSTI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03872 222 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Vivi6g03872 222 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Vivi6g03872 222 FunFam Ethylene-responsive transcription factor 2 82 142 - -
Vivi6g03872 222 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Vivi6g03872 222 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Vivi6g03872 222 MobiDBLite consensus disorder prediction 26 80 - -
Vivi6g03872 222 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
Vivi6g03872 222 Pfam AP2 domain 84 129 IPR001471 GO:0003700|GO:0006355
Vivi6g03872 222 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
Vivi6g03872 222 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Vivi6g03872 222 PANTHER DNA-BINDING DOMAIN 42 217 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03872 Vivi-Chr6 134633382 134634050 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03872 56 221 AP2-EREBP Transcription Factor Family AT3G23240 47.590 4.25e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi6g03872 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03872 K14516 - gmx:100818907 164.081