Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03870 ATGGAGGGAAAAGGAAACAACAATGGCGAGGTGCGATATAGAGGTATTCGTAGGAGACCATGGGGTAAGTTTGCAGCTGAAATTCGTGATCCAACTAGAAAAGGTTCTCGTATTTGGCTTGGAACATTTGATACTGCTGAGCAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCACAAAGCCATTCTCAACTTTCCAAATGAATATGCCCATTCTAATTCTACTAGTTATTATATTCCAAACACTACTTCTACCTCAAATAATACATTGCCTAACTCTTCTTCCTATCAACAACAAGATGATGATGATATTCTAGATCAACTGGCTTGCTTGGACTACAAGTTGTTGGAAGAATTCCTTCAGGGGAAAGATGATGCTCCAGCTGGTTGCTCTAGACGTGAATAG 417 0.4077 MEGKGNNNGEVRYRGIRRRPWGKFAAEIRDPTRKGSRIWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNEYAHSNSTSYYIPNTTSTSNNTLPNSSSYQQQDDDDILDQLACLDYKLLEEFLQGKDDAPAGCSRRE 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03870 138 FunFam Ethylene-responsive transcription factor 2 11 71 - -
Vivi6g03870 138 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Vivi6g03870 138 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vivi6g03870 138 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Vivi6g03870 138 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vivi6g03870 138 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Vivi6g03870 138 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Vivi6g03870 138 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Vivi6g03870 138 Pfam AP2 domain 12 63 IPR001471 GO:0003700|GO:0006355
Vivi6g03870 138 PANTHER DNA-BINDING DOMAIN 11 102 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03870 Vivi-Chr6 134596025 134596441 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03870 7 128 AP2-EREBP Transcription Factor Family AT3G23230 51.181 1.19e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g03870 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03870 - - gmx:100778998 140.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03870 6 134596025 134596441 Vivi6g03870 6 134596025 134596441 ECH
Vivi6g03870 6 134596025 134596441 Vivi1g06575 1 151590480 151591303 PCT