Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03866 ATGGATCATGTGATTGCTGGAAAGTTTAAACTTGGAAGGAAAATTGGAAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATGTACAAACTGGTGAGGAGGTAGCTGTCAAGCTGGAGCCTGTGAAGACTAAGCATCCGCAGCTTCACTATGAATCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGGTGCCTCATCTGAAGTGGTTTGGAGTTGAGGGAGACTACAATGTGATGGCGATCGACCTTCTTGGGCCCAGTCTGGAAGATCTATTCAATTATTGTAACCGGAAGTTAACATTGAAGACTGTGTTAATGCTTGCTGATCAACTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAATCAGGTCTACATCATTGACTACGGCCTCGCCAAAAAATTCAGAGATCTTCAGACTCATAAGCACATACCGTACAGAGAAAACAAGAACCTTACAGGAACAGCTCGGTATGCGAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGACCTGGAATCTCTTGGTTACGTTCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCGGGTACCAAAAAACAAAAATATGATAGAATCAGTGAGAAGAAGATGACAACTTCCATCGAGGTGCTTTGCAAATCATATCCTTCAGAGTTCGGATCATACTTCCACTACTGCCGATCTTTGCGGTTTGAAGACAAGCCTGACTACTCCTATTTAAAGAGGCTTTTTCGAGATCTATTTATTCGAGAAGGCTATCAATTTGACTATATTTTTGACTGGACTATATTGAAGTATCCGCAGATTAGTGGAAGCTCTAGAGGGAGGCATGACAGTGGCAAGGCGGCTATGAATGCAGGGCCATCTGTACAGAGGCCAGAAAAGACCTCAGTCGGGAAAGAGCTTCGAGAGAGATTCACTGGGGCTGTTGAAGCATTCTCGCGGAGGAACCCAACAAGTTCTAGTCCACGCCGTGATCATTCTAAACATAGAGGTTTTGAGGATGTAGCAGCCATACCCAAGGATGCGCATCATGAACAAGACAAGGGACGCAATTCCGGACGATATGGAAGCAGTTCAAGAAGACCTATAATCTCATCAACATCCAAGCCAAGTTCATCAGGTGATCATACTGACAGTCGTACTGGCCGGCTGACCTCTAGTAGCCGTCCATCAACCGCACATAGAGTTCAACCTATGTACGAAACCAAACAACCAACCTACACACGACCAGGATCTTCTAGAGGCAACCGCGATGATCCTCTGCGGAGTTTTGAACTCCTCTCAATCAGGAAGTAA 1386 0.443 MDHVIAGKFKLGRKIGSGSFGELYIAVNVQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKFRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMTTSIEVLCKSYPSEFGSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTILKYPQISGSSRGRHDSGKAAMNAGPSVQRPEKTSVGKELRERFTGAVEAFSRRNPTSSSPRRDHSKHRGFEDVAAIPKDAHHEQDKGRNSGRYGSSSRRPIISSTSKPSSSGDHTDSRTGRLTSSSRPSTAHRVQPMYETKQPTYTRPGSSRGNRDDPLRSFELLSIRK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03866 461 PANTHER CASEIN KINASE-RELATED 9 379 - -
Vivi6g03866 461 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vivi6g03866 461 CDD STKc_CK1_delta_epsilon 8 282 - -
Vivi6g03866 461 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03866 461 Gene3D Transferase(Phosphotransferase) domain 1 1 336 - -
Vivi6g03866 461 MobiDBLite consensus disorder prediction 325 339 - -
Vivi6g03866 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vivi6g03866 461 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03866 461 MobiDBLite consensus disorder prediction 445 461 - -
Vivi6g03866 461 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03866 461 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vivi6g03866 461 MobiDBLite consensus disorder prediction 349 381 - -
Vivi6g03866 461 FunFam Casein kinase 1-like protein 1 330 - -
Vivi6g03866 461 MobiDBLite consensus disorder prediction 301 461 - -
Vivi6g03866 461 FunFam Putative Casein kinase I 1 85 - -
Vivi6g03866 461 MobiDBLite consensus disorder prediction 382 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03866 Vivi-Chr6 134512105 134518672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03866 2 213 Miscellaneous Gene Families AT1G29230 26.484 1.26e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vivi6g03866 Pkinase 7.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03866 K08960 - cam:101493293 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03866 6 134512105 134518672 Vivi6g03866 6 134512105 134518672 ECH