Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03865 ATGGATTCGGCGAGGAGTTGGTTATCCAAGTTTCAACCGCGAGATAGACTGAGAGCTTCCACCAGGAAGAAGGACGACGTTATGGGCGGAACCGAGGATTCCGATGCGTCTGTTGATGACGAGAGTCTTTCTAGTGTTACAAAGCAGAAGGTAGCGGCCGCGAAACAGTACATTGAGAACCATTACAAGGAACAGATGAAGAGTCTTCAAGAGAGAAAGGAGCGGCGAACTATCTTGGAAAAGAAGTTGGCGGATGCTGATGTCTCCGAGGAAGATCAAAATAACTTACTTAAATTTCTAGAGAAAAAGGAAACGGAATATATGCGCCTTCAGAGGCATAAAATGGGTGTGGAGGATTTTGAGATGTTGACTATGATTGGAAAAGGCGCATTTGGGGAGGTGAGAGTCTGTAGGGAAAAGACTACGGATCATGTATTTGCGATGAAAAAGCTAAAGAAATCAGAAATGCTTCGAAGAGGCCAGGTTGAACATGTCAGAGCTGAGAGGAATCTTCTTGCAGAGGTTGACAGTAATTGTATAGTCAAACTTTATTGTTCTTTCCAGGATGATGATTATTTATATCTTATAATGGAGTATCTACCGGGAGGGGATATGATGACTCTACTTATGAGAAAGGATACATTGACCGAAGATGAAGCCCGATTTTACGTAGGAGAAACAGTTCTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAACTTATTACTTGATAAATACGGACACTTGAAACTATCAGATTTTGGATTATGTAAACCGTTAGACTGTAGTACACTTGAAGAATCAGATTTTTCTCAGAATGCAAATGGAACTGGCCAGGGTGATGATCGTGCAGGTCCGAAGCGTACGCAACAAGAACAGTTGGAAAACTGGCAGAAAAACAGGAGGACACTTGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTGGTGGGATATCCGCCTTTCTATTCCGATGATCCAATGTCAACATGCAGGAAGATAGTAAACTGGAAGTCTCACTTGAAATTTCCTGAAGAAGCAAGGCTATCTCCGGAGGCCATAGATCTTATAAGTAAGCTTTTGTGTAATGTGAATCAGAGACTGGGGTCAAATGGTGCGGTTGAAATTAAGTCTCATCCATTCTTTGAAGGTGTTCAATGGGAGAGATTGTATCAAATGGAAGCTGCATTTACTCCTGAAGTCAATGATGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGGCTGACAGCCAGACTCATTCATCATCAAGAGCTGGTCCATGGAGAAAGATGCTTTCATCTAAGGACTTTAATTTTGTGGGATACACATACAAGAACTTTGAAATTGTAAACGACTATCAAGTTCCTGGGATGGCTGAACTGAAGAAAACCTCCAAACCAAGGAGGCCGTCTGTCAAATCGCTGTTTGACGGGGACTCGGAGACTTCTGAGGCGTCTGATATGTCAGATGTGTCTGCAAACAATCAACCTGCTCAATGA 1605 0.4137 MDSARSWLSKFQPRDRLRASTRKKDDVMGGTEDSDASVDDESLSSVTKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFEMLTMIGKGAFGEVRVCREKTTDHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSTLEESDFSQNANGTGQGDDRAGPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAIDLISKLLCNVNQRLGSNGAVEIKSHPFFEGVQWERLYQMEAAFTPEVNDELDTQNFEKFEEADSQTHSSSRAGPWRKMLSSKDFNFVGYTYKNFEIVNDYQVPGMAELKKTSKPRRPSVKSLFDGDSETSEASDMSDVSANNQPAQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03865 534 MobiDBLite consensus disorder prediction 277 301 - -
Vivi6g03865 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vivi6g03865 534 SMART serkin_6 120 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03865 534 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vivi6g03865 534 SUPERFAMILY Protein kinase-like (PK-like) 93 470 IPR011009 -
Vivi6g03865 534 Gene3D Transferase(Phosphotransferase) domain 1 204 276 - -
Vivi6g03865 534 FunFam Non-specific serine/threonine protein kinase 315 434 - -
Vivi6g03865 534 Gene3D Transferase(Phosphotransferase) domain 1 313 434 - -
Vivi6g03865 534 CDD MobB_NDR_LATS-like 54 115 - -
Vivi6g03865 534 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Vivi6g03865 534 MobiDBLite consensus disorder prediction 496 534 - -
Vivi6g03865 534 ProSiteProfiles Protein kinase domain profile. 120 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03865 534 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Vivi6g03865 534 Gene3D Phosphorylase Kinase; domain 1 435 448 - -
Vivi6g03865 534 Gene3D Phosphorylase Kinase; domain 1 91 203 - -
Vivi6g03865 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 468 - -
Vivi6g03865 534 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Vivi6g03865 534 MobiDBLite consensus disorder prediction 9 31 - -
Vivi6g03865 534 MobiDBLite consensus disorder prediction 511 534 - -
Vivi6g03865 534 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi6g03865 534 Pfam Protein kinase domain 121 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g03865 534 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi6g03865 534 MobiDBLite consensus disorder prediction 1 45 - -
Vivi6g03865 534 CDD STKc_NDR_like 118 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03865 Vivi-Chr6 134499974 134503769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03865 1 511 AGC Kinase Gene Family AT2G20470 78.295 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vivi6g03865 Pkinase 3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03865 K08790 - gmx:100805940 952.97