Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03862 ATGGGTTTGAGAGACATAGGAGCTTCACTTCCTCCTGGCTTTCGTTTTTATCCAAGTGATCAAGAATTGGTTTGTCACTATCTTTACAAAAAGATCACAAATCAACAAATTCTTAGCCATTCTTTGCTTGATATTGATCTTCACATATGTGAACCATGGCAGCTTCCTGAGGTGGCAAAGCTTAATGCAAATGAATGGTACTTTTTTAGCTTTCGAGACCGTAAATATGCCACTGGATTTAGAACAAACAGAGCAACTATATCTGGCTATTGGAAAGCAACTGGGAAAGATCGTGTTGTGTTGGATCCAATGAGTGAAGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAGACAGGATGGATTATGCATGAGTTTAGGTTGGAGACACCACACATGCCTCCTAAGGAGGACTGGGTATTGTGTAGAGTCTTTCACAAAAGCAAAGAAGACAACAATTCAAAACTGAACACACAAGAATTCATATATGAGACAACACCTCCATCCCTAACATTGATGTCATCATCTCCAACAAATTACCAAACCATCCCTACTGGCTATAACAGAATTGATTCTTTTTCTTCCTCCATGACAACACTTCATCATTTAAATCCAAACCAAAACAATAATTCTTCCATCATCAATAATCTCTTTCAATATTCTCCTCATACAAATAATAATAATAATAATAATAGTACCATTACTCAAATTAGTTCCAAATGTGATGATGAATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGCTTAGAAGATGGTGTGGCTTCAAACATGGACGCAATAAGATTCGAGGTTGATAATAATAATACTACTACTAATAATATGGTTTTACTATAA 888 0.3604 MGLRDIGASLPPGFRFYPSDQELVCHYLYKKITNQQILSHSLLDIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRVVLDPMSEEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNSKLNTQEFIYETTPPSLTLMSSSPTNYQTIPTGYNRIDSFSSSMTTLHHLNPNQNNNSSIINNLFQYSPHTNNNNNNNSTITQISSKCDDEYGFLWNMDLEENSLEDGVASNMDAIRFEVDNNNTTTNNMVLL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03862 295 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vivi6g03862 295 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vivi6g03862 295 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vivi6g03862 295 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Vivi6g03862 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03862 Vivi-Chr6 134362685 134371375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03862 6 257 NAC Transcription Factor Family AT1G56010 43.123 5.55e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g03862 NAM 1.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03862 - - tpra:123889826 456.447